Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0398

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0397 and Psest_0398 are separated by 115 nucleotidesPsest_0398 and Psest_0399 are separated by 134 nucleotides Psest_0397: Psest_0397 - Small-conductance mechanosensitive channel, at 427,475 to 430,765 _0397 Psest_0398: Psest_0398 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 430,881 to 432,626 _0398 Psest_0399: Psest_0399 - Acyl-CoA dehydrogenases, at 432,761 to 434,575 _0399 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2at 429.951 kb on + strand, within Psest_0397at 430.471 kb on - strandat 430.690 kb on + strandat 430.882 kb on + strandat 431.252 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.878 kb on + strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 431.879 kb on - strand, within Psest_0398at 432.438 kb on - strand, within Psest_0398at 432.687 kb on - strandat 432.741 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.750 kb on + strandat 432.751 kb on - strandat 432.751 kb on - strandat 432.762 kb on + strandat 432.762 kb on + strandat 432.762 kb on + strandat 432.763 kb on - strandat 432.763 kb on - strandat 432.858 kb on + strandat 432.858 kb on + strandat 432.859 kb on - strandat 432.859 kb on - strandat 432.886 kb on - strandat 432.886 kb on - strandat 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.990 kb on + strand, within Psest_0399at 432.991 kb on - strand, within Psest_0399at 432.991 kb on - strand, within Psest_0399at 433.272 kb on + strand, within Psest_0399at 433.272 kb on + strand, within Psest_0399at 433.273 kb on - strand, within Psest_0399at 433.350 kb on + strand, within Psest_0399at 433.350 kb on + strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.351 kb on - strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.494 kb on + strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.495 kb on - strand, within Psest_0399at 433.620 kb on + strand, within Psest_0399

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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429,951 + Psest_0397 0.75 -1.7
430,471 - -0.3
430,690 + +0.4
430,882 + -0.1
431,252 + Psest_0398 0.21 -0.6
431,878 + Psest_0398 0.57 -0.7
431,878 + Psest_0398 0.57 -0.2
431,878 + Psest_0398 0.57 -1.1
431,878 + Psest_0398 0.57 -1.1
431,878 + Psest_0398 0.57 -2.1
431,879 - Psest_0398 0.57 +0.3
431,879 - Psest_0398 0.57 -0.3
431,879 - Psest_0398 0.57 -0.7
431,879 - Psest_0398 0.57 -1.1
431,879 - Psest_0398 0.57 -0.5
431,879 - Psest_0398 0.57 -1.1
431,879 - Psest_0398 0.57 -1.3
431,879 - Psest_0398 0.57 -1.6
431,879 - Psest_0398 0.57 +0.6
432,438 - Psest_0398 0.89 -2.2
432,687 - -0.0
432,741 + +1.0
432,750 + -2.1
432,750 + +1.0
432,750 + -0.6
432,750 + -0.3
432,751 - -0.9
432,751 - -0.7
432,762 + +2.6
432,762 + -0.2
432,762 + -0.8
432,763 - +0.2
432,763 - -0.6
432,858 + +0.0
432,858 + +0.0
432,859 - -0.3
432,859 - -0.1
432,886 - +0.0
432,886 - -0.2
432,990 + Psest_0399 0.13 -1.1
432,990 + Psest_0399 0.13 -1.4
432,990 + Psest_0399 0.13 +0.5
432,990 + Psest_0399 0.13 +2.0
432,990 + Psest_0399 0.13 -1.2
432,990 + Psest_0399 0.13 +0.5
432,990 + Psest_0399 0.13 -0.2
432,990 + Psest_0399 0.13 -1.1
432,991 - Psest_0399 0.13 -2.0
432,991 - Psest_0399 0.13 -1.3
433,272 + Psest_0399 0.28 -0.4
433,272 + Psest_0399 0.28 +0.3
433,273 - Psest_0399 0.28 -1.8
433,350 + Psest_0399 0.32 -1.0
433,350 + Psest_0399 0.32 -1.7
433,351 - Psest_0399 0.33 +1.5
433,351 - Psest_0399 0.33 +0.4
433,351 - Psest_0399 0.33 -0.7
433,351 - Psest_0399 0.33 +0.7
433,351 - Psest_0399 0.33 -0.2
433,494 + Psest_0399 0.40 -0.3
433,494 + Psest_0399 0.40 +1.0
433,494 + Psest_0399 0.40 +0.5
433,494 + Psest_0399 0.40 +0.3
433,494 + Psest_0399 0.40 +0.5
433,494 + Psest_0399 0.40 -0.6
433,495 - Psest_0399 0.40 +0.0
433,495 - Psest_0399 0.40 -1.7
433,495 - Psest_0399 0.40 +1.5
433,495 - Psest_0399 0.40 +0.5
433,620 + Psest_0399 0.47 -0.5

Or see this region's nucleotide sequence