Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4020

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,195,905	+		Psest_4018	0.64	-1.4
4,195,906	-		Psest_4018	0.64	+0.4
4,195,906	-		Psest_4018	0.64	-0.7
4,195,906	-		Psest_4018	0.64	-0.2
4,195,906	-		Psest_4018	0.64	+0.4
4,196,043	+		Psest_4018	0.82	+0.5
4,196,043	+		Psest_4018	0.82	+0.5
4,196,043	+		Psest_4018	0.82	-0.2
4,196,043	+		Psest_4018	0.82	+1.2
4,196,043	+		Psest_4018	0.82	-0.1
4,196,043	+		Psest_4018	0.82	+0.1
4,196,043	+		Psest_4018	0.82	-0.2
4,196,043	+		Psest_4018	0.82	+0.1
4,196,043	+		Psest_4018	0.82	+2.3
4,196,043	+		Psest_4018	0.82	+0.5
4,196,043	+		Psest_4018	0.82	+0.3
4,196,043	+		Psest_4018	0.82	+0.8
4,196,043	+		Psest_4018	0.82	+0.5
4,196,043	+		Psest_4018	0.82	+0.3
4,196,043	+		Psest_4018	0.82	+0.7
4,196,043	+		Psest_4018	0.82	-0.9
4,196,044	-		Psest_4018	0.82	+0.3
4,196,044	-		Psest_4018	0.82	+0.9
4,196,044	-		Psest_4018	0.82	+0.1
4,196,044	-		Psest_4018	0.82	-0.5
4,196,044	-		Psest_4018	0.82	+0.0
4,196,044	-		Psest_4018	0.82	+0.1
4,196,044	-		Psest_4018	0.82	+0.3
4,196,044	-		Psest_4018	0.82	+0.4
4,196,044	-		Psest_4018	0.82	+0.8
4,196,044	-		Psest_4018	0.82	+0.2
4,196,044	-		Psest_4018	0.82	+1.0
4,196,044	-		Psest_4018	0.82	+0.3
4,196,054	+		Psest_4018	0.83	+0.3
4,196,054	+		Psest_4018	0.83	+0.4
4,196,055	-		Psest_4018	0.83	+0.3
4,196,055	-		Psest_4018	0.83	+0.0
4,196,181	+				+0.7
4,196,224	+				-0.2
4,196,245	+				+0.2
4,196,246	-				-0.1
4,196,246	-				+0.3
4,196,267	-				+0.1
4,196,332	-				+0.4
4,196,336	+				+0.2
4,196,337	-				-1.1
4,196,338	+				+1.0
4,196,338	+				+0.1
4,196,338	+				-0.1
4,196,338	+				-0.1
4,196,338	+				+0.5
4,196,339	-				-0.6
4,196,339	-				-0.2
4,196,342	+				+0.6
4,196,342	+				+1.1
4,196,347	+				+0.5
4,196,347	+				+0.1
4,196,417	+				+0.9
4,196,417	+				-0.1
4,196,424	-				+0.5
4,196,424	-				+0.2
4,196,424	-				+0.6
4,196,424	-				+1.1
4,196,424	-				-0.1
4,196,424	-				-0.2
4,196,454	-				-0.8
4,196,664	+				+0.3
4,196,677	+				+0.2
4,196,695	+				+0.3
4,196,696	-				-0.0
4,196,702	+				+0.0
4,196,742	+				+0.5
4,196,742	+				+0.7
4,196,743	-				+1.5
4,196,743	-				-0.1
4,196,825	+				-1.2
4,196,825	+				-0.1
4,196,828	+				-0.6
4,196,828	+				+0.1
4,196,828	+				-0.1
4,196,828	+				+0.9
4,196,828	+				+0.4
4,196,828	+				+1.5
4,196,828	+				-1.2
4,196,829	-				-1.0
4,196,829	-				+1.0
4,196,829	-				+0.8
4,196,829	-				+0.7
4,196,829	-				+0.0
4,196,829	-				+0.9
4,196,829	-				+0.2
4,196,841	+				-0.3
4,196,841	+				-1.3
4,196,842	-				+0.1
4,196,842	-				-0.3
4,196,842	-				-0.0
4,196,842	-				+1.1
4,196,842	-				-0.4
4,196,877	+		Psest_4020	0.12	-1.2
4,196,877	+		Psest_4020	0.12	-0.6
4,196,877	+		Psest_4020	0.12	+0.9
4,196,877	+		Psest_4020	0.12	+0.0
4,196,877	+		Psest_4020	0.12	+0.7
4,196,878	-		Psest_4020	0.13	+0.1
4,196,878	-		Psest_4020	0.13	+1.2
4,196,878	-		Psest_4020	0.13	+0.4
4,196,878	-		Psest_4020	0.13	+0.7
4,196,878	-		Psest_4020	0.13	-0.1
4,196,878	-		Psest_4020	0.13	+0.3
4,196,911	+		Psest_4020	0.32	+0.8
4,196,912	-		Psest_4020	0.32	+0.3
4,196,912	-		Psest_4020	0.32	+1.7
4,196,912	-		Psest_4020	0.32	+0.9
4,196,912	-		Psest_4020	0.32	+0.2
4,196,912	-		Psest_4020	0.32	-0.1
4,196,912	-		Psest_4020	0.32	-0.0
4,196,912	-		Psest_4020	0.32	+0.5
4,196,915	+		Psest_4020	0.34	+0.4
4,196,916	-		Psest_4020	0.34	+1.6
4,196,916	-		Psest_4020	0.34	+0.7
4,197,065	-				+1.1
4,197,087	+				+0.4
4,197,179	-		Psest_4021	0.33	-1.1
4,197,179	-		Psest_4021	0.33	-0.0
4,197,228	+		Psest_4021	0.46	-0.4
4,197,228	+		Psest_4021	0.46	-0.1
4,197,229	-		Psest_4021	0.47	-0.2
4,197,229	-		Psest_4021	0.47	+0.1
4,197,229	-		Psest_4021	0.47	+0.7
4,197,229	-		Psest_4021	0.47	+0.4
4,197,308	+		Psest_4021	0.68	+0.6
4,197,308	+		Psest_4021	0.68	-1.5
4,197,308	+		Psest_4021	0.68	+1.0
4,197,309	-		Psest_4021	0.68	-1.2
4,197,423	+				-1.3
4,197,424	-				+0.8
4,197,468	+				+0.3
4,197,469	-				-0.5
4,197,509	-				+1.0
4,197,529	+				-0.6
4,197,529	+				-0.5
4,197,529	+				-0.3
4,197,530	-				+0.0
4,197,530	-				-0.4
4,197,530	-				+0.2
4,197,530	-				-0.0
4,197,583	+				-0.3
4,197,583	+				-0.9
4,197,684	+		Psest_4022	0.14	-0.4
4,197,736	+		Psest_4022	0.18	-0.9
4,197,736	+		Psest_4022	0.18	+0.4
4,197,737	-		Psest_4022	0.18	-0.0
4,197,737	-		Psest_4022	0.18	+0.3
4,197,737	-		Psest_4022	0.18	+0.8
4,197,737	-		Psest_4022	0.18	-0.1
4,197,737	-		Psest_4022	0.18	+0.2
4,197,737	-		Psest_4022	0.18	+0.4
4,197,793	+		Psest_4022	0.22	+0.1
4,197,811	+		Psest_4022	0.23	+1.5
4,197,812	-		Psest_4022	0.23	-0.1
4,197,817	+		Psest_4022	0.23	-0.1
4,197,817	+		Psest_4022	0.23	-0.3
4,197,820	+		Psest_4022	0.24	+1.1
4,197,820	+		Psest_4022	0.24	+0.2
4,197,820	+		Psest_4022	0.24	-0.0
4,197,820	+		Psest_4022	0.24	+0.2
4,197,821	-		Psest_4022	0.24	-0.0
4,197,821	-		Psest_4022	0.24	+0.7
4,197,821	-		Psest_4022	0.24	+0.8
4,197,919	-		Psest_4022	0.30	-0.1
4,197,919	-		Psest_4022	0.30	+0.8
4,197,949	+		Psest_4022	0.32	-0.0
4,197,949	+		Psest_4022	0.32	+0.2
4,197,949	+		Psest_4022	0.32	+0.1
4,197,950	-		Psest_4022	0.32	-0.5
4,198,020	-		Psest_4022	0.37	-1.1