Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4002 and Psest_4003 are separated by 38 nucleotides Psest_4003 and Psest_4004 are separated by 113 nucleotides Psest_4004 and Psest_4005 are separated by 105 nucleotides
Psest_4002: Psest_4002 - Phosphate/sulphate permeases, at 4,174,233 to 4,175,498
_4002
Psest_4003: Psest_4003 - TIGR00153 family protein, at 4,175,537 to 4,176,214
_4003
Psest_4004: Psest_4004 - Uncharacterized conserved protein, at 4,176,328 to 4,177,692
_4004
Psest_4005: Psest_4005 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 4,177,798 to 4,179,582
_4005
Position (kb) 4176
4177
4178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.620 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4176.152 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.250 kb on + strand at 4176.250 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.310 kb on - strand at 4176.353 kb on + strand at 4176.353 kb on + strand at 4176.451 kb on + strand at 4176.451 kb on + strand at 4176.452 kb on - strand at 4176.452 kb on - strand at 4176.454 kb on + strand at 4176.455 kb on - strand at 4176.455 kb on - strand at 4176.592 kb on + strand, within Psest_4004 at 4176.592 kb on + strand, within Psest_4004 at 4176.593 kb on - strand, within Psest_4004 at 4176.952 kb on + strand, within Psest_4004 at 4176.953 kb on - strand, within Psest_4004 at 4177.063 kb on + strand, within Psest_4004 at 4177.691 kb on - strand at 4177.691 kb on - strand at 4177.691 kb on - strand at 4177.754 kb on - strand at 4178.053 kb on + strand, within Psest_4005 at 4178.110 kb on + strand, within Psest_4005 at 4178.111 kb on - strand, within Psest_4005 at 4178.290 kb on + strand, within Psest_4005 at 4178.291 kb on - strand, within Psest_4005 at 4178.543 kb on - strand, within Psest_4005
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,175,506 - +0.5 4,175,506 - +0.4 4,175,506 - -0.4 4,175,506 - -1.2 4,175,506 - -0.6 4,175,620 - Psest_4003 0.12 -0.5 4,175,845 - Psest_4003 0.45 -2.3 4,175,845 - Psest_4003 0.45 -1.0 4,175,845 - Psest_4003 0.45 -1.2 4,175,845 - Psest_4003 0.45 -1.6 4,175,845 - Psest_4003 0.45 -0.9 4,175,845 - Psest_4003 0.45 -1.1 4,175,943 - Psest_4003 0.60 -1.5 4,175,943 - Psest_4003 0.60 -0.1 4,175,943 - Psest_4003 0.60 -1.0 4,175,943 - Psest_4003 0.60 +0.4 4,175,943 - Psest_4003 0.60 +0.0 4,176,152 - -0.0 4,176,249 - +0.9 4,176,249 - -0.6 4,176,249 - -0.9 4,176,249 - +0.8 4,176,249 - +1.1 4,176,249 - -0.1 4,176,249 - +0.9 4,176,249 - +0.3 4,176,249 - -1.0 4,176,250 + -0.7 4,176,250 + -0.9 4,176,309 + -0.0 4,176,309 + -0.6 4,176,309 + +0.0 4,176,309 + -0.5 4,176,309 + -1.1 4,176,309 + -0.2 4,176,309 + +1.1 4,176,310 - -1.5 4,176,353 + +1.1 4,176,353 + -0.0 4,176,451 + -0.9 4,176,451 + +0.1 4,176,452 - -1.2 4,176,452 - +0.1 4,176,454 + -2.3 4,176,455 - +0.3 4,176,455 - +2.3 4,176,592 + Psest_4004 0.19 -1.5 4,176,592 + Psest_4004 0.19 +0.7 4,176,593 - Psest_4004 0.19 +0.4 4,176,952 + Psest_4004 0.46 +0.6 4,176,953 - Psest_4004 0.46 +0.1 4,177,063 + Psest_4004 0.54 +0.4 4,177,691 - -0.9 4,177,691 - +0.1 4,177,691 - +0.2 4,177,754 - +0.3 4,178,053 + Psest_4005 0.14 -0.5 4,178,110 + Psest_4005 0.17 +0.3 4,178,111 - Psest_4005 0.18 +0.1 4,178,290 + Psest_4005 0.28 -0.9 4,178,291 - Psest_4005 0.28 -0.0 4,178,543 - Psest_4005 0.42 +0.2
Or see this region's nucleotide sequence