Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0385 and Psest_0386 are separated by 0 nucleotides Psest_0386 and Psest_0387 overlap by 11 nucleotides Psest_0387 and Psest_0388 are separated by 188 nucleotides Psest_0388 and Psest_0389 overlap by 1 nucleotides Psest_0389 and Psest_0390 are separated by 5 nucleotides
Psest_0385: Psest_0385 - Conserved secreted protein, at 414,833 to 415,336
_0385
Psest_0386: Psest_0386 - Membrane protease subunits, stomatin/prohibitin homologs, at 415,337 to 416,095
_0386
Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464
_0387
Psest_0388: Psest_0388 - hypothetical protein, at 417,653 to 417,778
_0388
Psest_0389: Psest_0389 - hypothetical protein, at 417,778 to 417,975
_0389
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Position (kb) 416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.128 kb on + strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.443 kb on + strand, within Psest_0386 at 415.443 kb on + strand, within Psest_0386 at 415.444 kb on - strand, within Psest_0386 at 415.782 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 416.060 kb on + strand at 416.060 kb on + strand at 416.089 kb on - strand at 416.406 kb on + strand, within Psest_0387 at 416.557 kb on + strand, within Psest_0387 at 416.557 kb on + strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.558 kb on - strand, within Psest_0387 at 416.585 kb on - strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.665 kb on + strand, within Psest_0387 at 416.727 kb on + strand, within Psest_0387 at 416.728 kb on - strand, within Psest_0387 at 416.854 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 417.072 kb on - strand, within Psest_0387 at 417.145 kb on + strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.519 kb on - strand at 417.519 kb on - strand at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 415,128 + Psest_0385 0.59 -0.1 415,129 - Psest_0385 0.59 -0.8 415,129 - Psest_0385 0.59 +0.1 415,328 + -1.5 415,328 + -0.9 415,328 + +0.1 415,328 + +0.1 415,328 + +0.1 415,328 + -1.3 415,329 - -2.8 415,329 - -0.9 415,329 - -1.3 415,329 - +1.1 415,329 - -0.4 415,329 - -0.9 415,329 - -1.4 415,329 - +0.8 415,329 - +1.1 415,329 - -1.8 415,329 - +2.1 415,329 - -0.2 415,443 + Psest_0386 0.14 +0.8 415,443 + Psest_0386 0.14 -0.5 415,444 - Psest_0386 0.14 -0.9 415,782 + Psest_0386 0.59 +2.6 415,830 + Psest_0386 0.65 -0.5 415,830 + Psest_0386 0.65 -0.4 415,830 + Psest_0386 0.65 +1.8 415,830 + Psest_0386 0.65 +1.1 415,830 + Psest_0386 0.65 -0.9 415,830 + Psest_0386 0.65 +1.1 415,830 + Psest_0386 0.65 +0.5 415,830 + Psest_0386 0.65 -1.3 415,830 + Psest_0386 0.65 +1.6 415,830 + Psest_0386 0.65 +2.1 415,831 - Psest_0386 0.65 -0.4 415,831 - Psest_0386 0.65 -0.3 415,831 - Psest_0386 0.65 -1.5 415,831 - Psest_0386 0.65 -1.3 415,831 - Psest_0386 0.65 -1.8 415,831 - Psest_0386 0.65 +1.4 415,831 - Psest_0386 0.65 +0.5 416,060 + -0.1 416,060 + +2.1 416,089 - -0.5 416,406 + Psest_0387 0.23 -1.3 416,557 + Psest_0387 0.34 -0.5 416,557 + Psest_0387 0.34 -0.9 416,558 - Psest_0387 0.34 -3.7 416,558 - Psest_0387 0.34 +1.1 416,558 - Psest_0387 0.34 +0.1 416,558 - Psest_0387 0.34 +1.1 416,585 - Psest_0387 0.36 -0.9 416,665 + Psest_0387 0.42 -0.5 416,665 + Psest_0387 0.42 -0.1 416,665 + Psest_0387 0.42 +0.1 416,665 + Psest_0387 0.42 -2.1 416,727 + Psest_0387 0.47 +1.1 416,728 - Psest_0387 0.47 -0.8 416,854 + Psest_0387 0.56 -0.8 416,968 + Psest_0387 0.64 -0.9 416,968 + Psest_0387 0.64 +1.6 416,968 + Psest_0387 0.64 -1.3 416,968 + Psest_0387 0.64 -0.8 416,969 - Psest_0387 0.64 -0.5 416,969 - Psest_0387 0.64 -1.1 416,969 - Psest_0387 0.64 -0.5 417,072 - Psest_0387 0.72 -1.9 417,145 + Psest_0387 0.77 +0.1 417,146 - Psest_0387 0.77 -0.5 417,146 - Psest_0387 0.77 +0.7 417,146 - Psest_0387 0.77 -0.3 417,154 + Psest_0387 0.77 -0.9 417,154 + Psest_0387 0.77 -0.5 417,154 + Psest_0387 0.77 -1.3 417,154 + Psest_0387 0.77 -0.9 417,154 + Psest_0387 0.77 +1.6 417,154 + Psest_0387 0.77 +1.1 417,154 + Psest_0387 0.77 +1.1 417,154 + Psest_0387 0.77 +1.1 417,154 + Psest_0387 0.77 +1.1 417,154 + Psest_0387 0.77 -0.5 417,154 + Psest_0387 0.77 +0.5 417,154 + Psest_0387 0.77 +0.1 417,154 + Psest_0387 0.77 -2.1 417,155 - Psest_0387 0.78 -1.1 417,155 - Psest_0387 0.78 -0.5 417,155 - Psest_0387 0.78 -1.3 417,155 - Psest_0387 0.78 +0.7 417,155 - Psest_0387 0.78 -0.8 417,155 - Psest_0387 0.78 +0.6 417,155 - Psest_0387 0.78 +0.1 417,155 - Psest_0387 0.78 -0.8 417,155 - Psest_0387 0.78 +1.1 417,155 - Psest_0387 0.78 -0.5 417,155 - Psest_0387 0.78 -0.9 417,155 - Psest_0387 0.78 -0.5 417,155 - Psest_0387 0.78 +0.1 417,196 + Psest_0387 0.81 +0.6 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 +0.1 417,196 + Psest_0387 0.81 +0.1 417,196 + Psest_0387 0.81 +2.1 417,196 + Psest_0387 0.81 -0.1 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 +1.1 417,196 + Psest_0387 0.81 -1.1 417,196 + Psest_0387 0.81 +0.1 417,196 + Psest_0387 0.81 +0.5 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 -1.3 417,196 + Psest_0387 0.81 +0.5 417,196 + Psest_0387 0.81 -1.8 417,196 + Psest_0387 0.81 -1.3 417,196 + Psest_0387 0.81 -1.1 417,196 + Psest_0387 0.81 +1.1 417,196 + Psest_0387 0.81 +1.1 417,196 + Psest_0387 0.81 -0.8 417,197 - Psest_0387 0.81 -1.5 417,197 - Psest_0387 0.81 +0.1 417,197 - Psest_0387 0.81 -0.5 417,197 - Psest_0387 0.81 -0.6 417,197 - Psest_0387 0.81 -2.6 417,197 - Psest_0387 0.81 -0.9 417,197 - Psest_0387 0.81 -0.5 417,197 - Psest_0387 0.81 -0.3 417,197 - Psest_0387 0.81 +1.1 417,197 - Psest_0387 0.81 +1.1 417,197 - Psest_0387 0.81 +0.1 417,197 - Psest_0387 0.81 -1.4 417,197 - Psest_0387 0.81 -0.3 417,197 - Psest_0387 0.81 -1.9 417,197 - Psest_0387 0.81 -1.1 417,333 + +0.6 417,333 + +0.5 417,333 + +0.1 417,333 + +1.1 417,333 + +0.5 417,333 + +0.1 417,333 + +0.1 417,333 + +1.1 417,333 + +1.6 417,334 - +0.1 417,334 - +1.3 417,334 - +2.6 417,334 - -2.1 417,334 - -1.3 417,334 - -1.5 417,334 - -0.3 417,334 - -0.5 417,334 - +1.1 417,334 - -1.8 417,337 + -0.5 417,337 + +1.1 417,337 + -1.3 417,337 + -0.9 417,337 + +1.1 417,338 - -0.9 417,338 - -0.9 417,338 - +0.6 417,338 - +0.5 417,446 + +1.5 417,446 + -0.5 417,446 + +1.1 417,519 - +0.1 417,519 - -0.5 417,886 + Psest_0389 0.55 +1.1 417,886 + Psest_0389 0.55 +0.1 417,886 + Psest_0389 0.55 +1.1 417,886 + Psest_0389 0.55 +0.1 417,886 + Psest_0389 0.55 -0.5 417,886 + Psest_0389 0.55 +0.3 417,887 - Psest_0389 0.55 -1.3 417,887 - Psest_0389 0.55 -2.4 417,887 - Psest_0389 0.55 -1.9
Or see this region's nucleotide sequence