Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0384 and Psest_0385 are separated by 313 nucleotides Psest_0385 and Psest_0386 are separated by 0 nucleotides Psest_0386 and Psest_0387 overlap by 11 nucleotides
Psest_0384: Psest_0384 - outer membrane porin, OprD family., at 413,248 to 414,519
_0384
Psest_0385: Psest_0385 - Conserved secreted protein, at 414,833 to 415,336
_0385
Psest_0386: Psest_0386 - Membrane protease subunits, stomatin/prohibitin homologs, at 415,337 to 416,095
_0386
Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464
_0387
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.870 kb on + strand, within Psest_0384 at 414.190 kb on + strand, within Psest_0384 at 414.212 kb on + strand, within Psest_0384 at 414.212 kb on + strand, within Psest_0384 at 414.212 kb on + strand, within Psest_0384 at 414.213 kb on - strand, within Psest_0384 at 414.290 kb on + strand, within Psest_0384 at 414.290 kb on + strand, within Psest_0384 at 414.380 kb on + strand, within Psest_0384 at 414.380 kb on + strand, within Psest_0384 at 414.381 kb on - strand, within Psest_0384 at 414.381 kb on - strand, within Psest_0384 at 414.381 kb on - strand, within Psest_0384 at 414.381 kb on - strand, within Psest_0384 at 414.381 kb on - strand, within Psest_0384 at 414.520 kb on + strand at 414.690 kb on + strand at 414.691 kb on - strand at 414.719 kb on - strand at 414.719 kb on - strand at 414.771 kb on - strand at 414.847 kb on - strand at 415.128 kb on + strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.129 kb on - strand, within Psest_0385 at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.328 kb on + strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.443 kb on + strand, within Psest_0386 at 415.443 kb on + strand, within Psest_0386 at 415.444 kb on - strand, within Psest_0386 at 415.782 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.830 kb on + strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 415.831 kb on - strand, within Psest_0386 at 416.060 kb on + strand at 416.060 kb on + strand at 416.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 413,870 + Psest_0384 0.49 +1.1 414,190 + Psest_0384 0.74 +1.1 414,212 + Psest_0384 0.76 +0.4 414,212 + Psest_0384 0.76 +0.5 414,212 + Psest_0384 0.76 +1.1 414,213 - Psest_0384 0.76 -0.2 414,290 + Psest_0384 0.82 +2.6 414,290 + Psest_0384 0.82 +0.5 414,380 + Psest_0384 0.89 +2.1 414,380 + Psest_0384 0.89 +2.4 414,381 - Psest_0384 0.89 +1.1 414,381 - Psest_0384 0.89 -0.3 414,381 - Psest_0384 0.89 +0.3 414,381 - Psest_0384 0.89 +0.1 414,381 - Psest_0384 0.89 -1.3 414,520 + -0.7 414,690 + -2.9 414,691 - +1.1 414,719 - +1.6 414,719 - -0.5 414,771 - +0.6 414,847 - +2.1 415,128 + Psest_0385 0.59 -0.1 415,129 - Psest_0385 0.59 -0.8 415,129 - Psest_0385 0.59 +0.1 415,328 + -1.5 415,328 + -0.9 415,328 + +0.1 415,328 + +0.1 415,328 + +0.1 415,328 + -1.3 415,329 - -2.8 415,329 - -0.9 415,329 - -1.3 415,329 - +1.1 415,329 - -0.4 415,329 - -0.9 415,329 - -1.4 415,329 - +0.8 415,329 - +1.1 415,329 - -1.8 415,329 - +2.1 415,329 - -0.2 415,443 + Psest_0386 0.14 +0.8 415,443 + Psest_0386 0.14 -0.5 415,444 - Psest_0386 0.14 -0.9 415,782 + Psest_0386 0.59 +2.6 415,830 + Psest_0386 0.65 -0.5 415,830 + Psest_0386 0.65 -0.4 415,830 + Psest_0386 0.65 +1.8 415,830 + Psest_0386 0.65 +1.1 415,830 + Psest_0386 0.65 -0.9 415,830 + Psest_0386 0.65 +1.1 415,830 + Psest_0386 0.65 +0.5 415,830 + Psest_0386 0.65 -1.3 415,830 + Psest_0386 0.65 +1.6 415,830 + Psest_0386 0.65 +2.1 415,831 - Psest_0386 0.65 -0.4 415,831 - Psest_0386 0.65 -0.3 415,831 - Psest_0386 0.65 -1.5 415,831 - Psest_0386 0.65 -1.3 415,831 - Psest_0386 0.65 -1.8 415,831 - Psest_0386 0.65 +1.4 415,831 - Psest_0386 0.65 +0.5 416,060 + -0.1 416,060 + +2.1 416,089 - -0.5
Or see this region's nucleotide sequence