Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3842

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,013,250	-		Psest_3841	0.66	-0.5
4,013,333	+		Psest_3841	0.71	-1.5
4,013,334	-		Psest_3841	0.71	-1.2
4,013,334	-		Psest_3841	0.71	-0.5
4,013,337	-		Psest_3841	0.72	-2.8
4,013,337	-		Psest_3841	0.72	-0.2
4,013,337	-		Psest_3841	0.72	-0.4
4,013,337	-		Psest_3841	0.72	+0.1
4,013,337	-		Psest_3841	0.72	+0.1
4,013,337	-		Psest_3841	0.72	+0.1
4,013,346	-		Psest_3841	0.72	+0.2
4,013,346	-		Psest_3841	0.72	+0.0
4,013,346	-		Psest_3841	0.72	-1.7
4,013,346	-		Psest_3841	0.72	+2.7
4,013,633	+				+0.8
4,013,751	-				-0.4
4,013,751	-				-2.1
4,013,751	-				+0.4
4,013,942	-				+0.0
4,014,173	+		Psest_3842	0.22	+1.3
4,014,296	-		Psest_3842	0.38	+0.6
4,014,383	+		Psest_3842	0.49	+2.1
4,014,577	+		Psest_3842	0.74	+0.8
4,014,684	+		Psest_3842	0.88	+0.0
4,014,803	+				+1.4
4,014,804	-				+0.1
4,014,861	+				-0.6
4,014,862	-				+0.1
4,014,862	-				+0.6
4,014,973	+		Psest_3843	0.16	+0.1
4,014,973	+		Psest_3843	0.16	+0.7
4,014,974	-		Psest_3843	0.16	-0.7
4,014,974	-		Psest_3843	0.16	-0.8
4,014,974	-		Psest_3843	0.16	+2.1
4,014,974	-		Psest_3843	0.16	-0.8
4,015,129	+		Psest_3843	0.44	+0.7
4,015,129	+		Psest_3843	0.44	+0.3
4,015,129	+		Psest_3843	0.44	-1.2
4,015,129	+		Psest_3843	0.44	-1.6
4,015,129	+		Psest_3843	0.44	+0.2
4,015,129	+		Psest_3843	0.44	-0.8
4,015,129	+		Psest_3843	0.44	-0.3
4,015,129	+		Psest_3843	0.44	+0.4
4,015,129	+		Psest_3843	0.44	+0.3
4,015,129	+		Psest_3843	0.44	-0.2
4,015,129	+		Psest_3843	0.44	+0.0
4,015,129	+		Psest_3843	0.44	+1.5
4,015,129	+		Psest_3843	0.44	+0.6
4,015,130	-		Psest_3843	0.45	-1.9
4,015,130	-		Psest_3843	0.45	-0.2
4,015,130	-		Psest_3843	0.45	-0.0
4,015,130	-		Psest_3843	0.45	-0.0
4,015,130	-		Psest_3843	0.45	-0.9
4,015,130	-		Psest_3843	0.45	-0.1
4,015,130	-		Psest_3843	0.45	+0.0
4,015,130	-		Psest_3843	0.45	-0.9
4,015,130	-		Psest_3843	0.45	-0.7
4,015,130	-		Psest_3843	0.45	-0.1
4,015,130	-		Psest_3843	0.45	-0.2
4,015,130	-		Psest_3843	0.45	-1.4
4,015,130	-		Psest_3843	0.45	-0.8
4,015,394	+				+0.2
4,015,394	+				-0.7
4,015,394	+				-1.1
4,015,394	+				-0.0
4,015,394	+				-0.1
4,015,394	+				+1.3
4,015,394	+				+0.4
4,015,395	-				-0.2
4,015,395	-				+0.4
4,015,395	-				+0.2
4,015,395	-				-1.2
4,015,395	-				-0.2
4,015,484	+				+0.2
4,015,484	+				-0.0
4,015,484	+				-0.1
4,015,484	+				+0.6
4,015,484	+				+0.6