Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0375 and Psest_0376 are separated by 92 nucleotides Psest_0376 and Psest_0377 are separated by 108 nucleotides
Psest_0375: Psest_0375 - NAD-dependent aldehyde dehydrogenases, at 402,072 to 403,514
_0375
Psest_0376: Psest_0376 - glucarate dehydratase, at 403,607 to 404,947
_0376
Psest_0377: Psest_0377 - galactarate dehydratase, at 405,056 to 406,621
_0377
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.083 kb on + strand, within Psest_0375 at 403.158 kb on + strand, within Psest_0375 at 403.158 kb on + strand, within Psest_0375 at 403.260 kb on + strand, within Psest_0375 at 403.260 kb on + strand, within Psest_0375 at 403.336 kb on - strand, within Psest_0375 at 403.482 kb on + strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.483 kb on - strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.503 kb on + strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.504 kb on - strand at 403.847 kb on + strand, within Psest_0376 at 403.847 kb on + strand, within Psest_0376 at 403.847 kb on + strand, within Psest_0376 at 403.848 kb on - strand, within Psest_0376 at 403.848 kb on - strand, within Psest_0376 at 404.195 kb on + strand, within Psest_0376 at 404.195 kb on + strand, within Psest_0376 at 404.894 kb on + strand at 404.895 kb on - strand at 404.895 kb on - strand at 404.895 kb on - strand at 405.412 kb on + strand, within Psest_0377 at 405.412 kb on + strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 402,960 + Psest_0375 0.62 +0.3 402,960 + Psest_0375 0.62 +0.1 402,960 + Psest_0375 0.62 +0.5 402,960 + Psest_0375 0.62 +0.2 402,960 + Psest_0375 0.62 +0.7 402,960 + Psest_0375 0.62 +0.7 402,960 + Psest_0375 0.62 +1.1 402,961 - Psest_0375 0.62 -0.1 402,961 - Psest_0375 0.62 +0.2 403,083 + Psest_0375 0.70 -0.9 403,083 + Psest_0375 0.70 -0.2 403,083 + Psest_0375 0.70 +0.1 403,158 + Psest_0375 0.75 +0.2 403,158 + Psest_0375 0.75 -1.4 403,260 + Psest_0375 0.82 +1.1 403,260 + Psest_0375 0.82 -1.0 403,336 - Psest_0375 0.88 -0.5 403,482 + -1.0 403,483 - -1.5 403,483 - -0.6 403,483 - -0.4 403,483 - +0.3 403,483 - -0.4 403,483 - +0.3 403,503 + -1.4 403,503 + -1.3 403,503 + +0.5 403,503 + -0.4 403,503 + -1.4 403,503 + +2.1 403,504 - +0.4 403,504 - +0.1 403,504 - -0.5 403,504 - -0.4 403,504 - -1.4 403,504 - -0.5 403,504 - +0.1 403,504 - +1.8 403,847 + Psest_0376 0.18 -1.5 403,847 + Psest_0376 0.18 -1.1 403,847 + Psest_0376 0.18 +2.1 403,848 - Psest_0376 0.18 -2.0 403,848 - Psest_0376 0.18 -0.7 404,195 + Psest_0376 0.44 +0.1 404,195 + Psest_0376 0.44 -0.3 404,894 + -1.3 404,895 - -2.1 404,895 - +0.7 404,895 - -1.7 405,412 + Psest_0377 0.23 +0.1 405,412 + Psest_0377 0.23 +0.1 405,413 - Psest_0377 0.23 -0.7 405,413 - Psest_0377 0.23 +0.8 405,413 - Psest_0377 0.23 -0.3 405,413 - Psest_0377 0.23 -2.1 405,413 - Psest_0377 0.23 +0.8 405,413 - Psest_0377 0.23 -0.5 405,413 - Psest_0377 0.23 -0.9 405,623 + Psest_0377 0.36 -0.9 405,623 + Psest_0377 0.36 +0.1 405,623 + Psest_0377 0.36 -0.3 405,624 - Psest_0377 0.36 +0.0 405,624 - Psest_0377 0.36 -1.1 405,624 - Psest_0377 0.36 -0.7 405,624 - Psest_0377 0.36 -2.5 405,624 - Psest_0377 0.36 -0.4 405,624 - Psest_0377 0.36 +1.1 405,624 - Psest_0377 0.36 -1.2
Or see this region's nucleotide sequence