Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3742

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,912,429	-		Psest_3740	0.76	-1.0
3,912,429	-		Psest_3740	0.76	-1.0
3,912,429	-		Psest_3740	0.76	-0.8
3,912,525	-		Psest_3740	0.81	+0.5
3,912,551	+		Psest_3740	0.82	+0.0
3,912,646	+		Psest_3740	0.87	-0.8
3,912,646	+		Psest_3740	0.87	-1.5
3,912,646	+		Psest_3740	0.87	-0.5
3,912,646	+		Psest_3740	0.87	-0.0
3,912,647	-		Psest_3740	0.87	+1.0
3,912,647	-		Psest_3740	0.87	-1.0
3,912,647	-		Psest_3740	0.87	+0.4
3,912,868	-				+0.7
3,912,868	-				-0.8
3,912,868	-				+0.4
3,912,868	-				-0.3
3,912,868	-				+0.3
3,912,893	+				+0.5
3,912,893	+				+1.6
3,912,893	+				+0.0
3,912,894	-				+0.6
3,912,894	-				+1.3
3,912,894	-				-1.5
3,912,894	-				+0.1
3,912,908	+				+0.9
3,912,909	-				+0.2
3,913,001	+				-0.2
3,913,002	-				-1.1
3,913,855	+		Psest_3742	0.53	-0.2
3,913,856	-		Psest_3742	0.53	+0.5
3,913,856	-		Psest_3742	0.53	+1.7
3,913,943	+		Psest_3742	0.64	+0.7
3,913,943	+		Psest_3742	0.64	+0.5
3,913,943	+		Psest_3742	0.64	+0.5
3,913,943	+		Psest_3742	0.64	+0.7
3,913,943	+		Psest_3742	0.64	-0.8
3,913,944	-		Psest_3742	0.64	-0.5
3,914,217	+				+0.3
3,914,217	+				-0.3
3,914,277	+				+1.0
3,914,277	+				+2.6
3,914,277	+				+0.5
3,914,280	+				+0.9
3,914,280	+				+0.5
3,914,281	-				+0.3
3,914,281	-				+1.0
3,914,281	-				+1.0
3,914,360	+				+0.8
3,914,546	-		Psest_3743	0.42	-0.4
3,914,615	-		Psest_3743	0.57	+0.5
3,914,641	+		Psest_3743	0.62	+0.0
3,914,641	+		Psest_3743	0.62	-0.3
3,914,642	-		Psest_3743	0.63	+0.3
3,914,642	-		Psest_3743	0.63	-0.8
3,914,653	+		Psest_3743	0.65	+0.0
3,914,766	+		Psest_3743	0.89	-0.3
3,914,766	+		Psest_3743	0.89	+0.4
3,914,766	+		Psest_3743	0.89	+1.4
3,914,766	+		Psest_3743	0.89	+0.3
3,914,766	+		Psest_3743	0.89	+2.0
3,914,767	-		Psest_3743	0.89	+0.6
3,914,772	+				+0.7
3,914,772	+				+0.4
3,914,772	+				+0.4
3,914,772	+				+1.0
3,914,772	+				+0.0
3,914,772	+				+0.0
3,914,772	+				-1.0
3,914,773	-				-0.2
3,914,773	-				-1.4
3,914,773	-				+1.0
3,914,773	-				-1.0
3,914,773	-				+0.0
3,914,773	-				-0.3
3,914,773	-				+0.0
3,914,773	-				+0.1
3,914,834	-				-1.1
3,914,849	-				+1.0
3,914,940	+				-1.8
3,914,940	+				-0.4
3,914,941	-				+0.2
3,915,063	-				+0.5