Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3719

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,885,900	+		Psest_3717	0.59	+0.1
3,885,900	+		Psest_3717	0.59	+0.8
3,885,900	+		Psest_3717	0.59	+0.7
3,885,900	+		Psest_3717	0.59	+0.4
3,885,901	-		Psest_3717	0.59	+2.0
3,885,901	-		Psest_3717	0.59	+1.4
3,885,901	-		Psest_3717	0.59	-1.8
3,885,931	+		Psest_3717	0.64	-2.1
3,885,931	+		Psest_3717	0.64	+0.0
3,885,932	-		Psest_3717	0.64	-0.3
3,885,995	-		Psest_3717	0.75	+0.9
3,885,995	-		Psest_3717	0.75	+0.5
3,886,011	+		Psest_3717	0.77	+0.0
3,886,011	+		Psest_3717	0.77	+0.0
3,886,012	-		Psest_3717	0.77	+0.0
3,886,029	-		Psest_3717	0.80	+0.6
3,886,029	-		Psest_3717	0.80	+0.4
3,886,090	+		Psest_3717	0.90	+0.3
3,886,090	+		Psest_3717	0.90	+0.5
3,886,095	-				-0.8
3,886,095	-				-1.0
3,886,145	+				-1.1
3,886,145	+				-0.2
3,886,146	-				+1.2
3,886,146	-				-0.3
3,886,248	+		Psest_3718	0.17	-0.2
3,886,248	+		Psest_3718	0.17	+0.0
3,886,382	+		Psest_3718	0.40	+0.7
3,886,431	+		Psest_3718	0.49	-0.5
3,886,501	-		Psest_3718	0.61	+1.0
3,886,582	+		Psest_3718	0.75	+0.0
3,886,583	-		Psest_3718	0.76	-1.0
3,886,583	-		Psest_3718	0.76	-1.8
3,886,596	-		Psest_3718	0.78	+0.2
3,886,596	-		Psest_3718	0.78	-0.2
3,886,619	-		Psest_3718	0.82	-0.9
3,886,619	-		Psest_3718	0.82	-0.9
3,886,705	+				-0.4
3,886,706	-				-2.3
3,886,706	-				-0.3
3,886,806	-				+0.2
3,886,839	+		Psest_3719	0.11	+0.1
3,886,839	+		Psest_3719	0.11	+0.7
3,886,840	-		Psest_3719	0.11	+0.5
3,886,840	-		Psest_3719	0.11	+0.4
3,886,840	-		Psest_3719	0.11	+0.6
3,886,878	+		Psest_3719	0.15	+2.6
3,886,878	+		Psest_3719	0.15	+0.5
3,886,879	-		Psest_3719	0.15	+2.0
3,886,980	+		Psest_3719	0.24	-0.1
3,886,981	-		Psest_3719	0.24	-0.4
3,886,981	-		Psest_3719	0.24	-0.3
3,887,020	+		Psest_3719	0.28	+1.3
3,887,020	+		Psest_3719	0.28	+0.0
3,887,091	+		Psest_3719	0.35	+0.1
3,887,091	+		Psest_3719	0.35	+0.4
3,887,091	+		Psest_3719	0.35	+0.7
3,887,091	+		Psest_3719	0.35	+0.4
3,887,091	+		Psest_3719	0.35	+0.1
3,887,092	-		Psest_3719	0.35	-0.1
3,887,092	-		Psest_3719	0.35	-0.6
3,887,092	-		Psest_3719	0.35	-0.4
3,887,092	-		Psest_3719	0.35	+0.9
3,887,137	+		Psest_3719	0.39	-0.3
3,887,137	+		Psest_3719	0.39	+0.4
3,887,137	+		Psest_3719	0.39	+0.0
3,887,137	+		Psest_3719	0.39	+0.6
3,887,138	-		Psest_3719	0.39	+0.0
3,887,138	-		Psest_3719	0.39	+1.6
3,887,138	-		Psest_3719	0.39	+0.9
3,887,138	-		Psest_3719	0.39	+1.4
3,887,189	+		Psest_3719	0.44	+0.9
3,887,190	-		Psest_3719	0.44	+1.4
3,887,190	-		Psest_3719	0.44	+1.2
3,887,190	-		Psest_3719	0.44	+1.3
3,887,190	-		Psest_3719	0.44	+0.0
3,887,190	-		Psest_3719	0.44	+0.8
3,887,194	-		Psest_3719	0.44	+1.3
3,887,270	-		Psest_3719	0.51	-0.3
3,887,446	+		Psest_3719	0.68	+0.4
3,887,446	+		Psest_3719	0.68	+0.0
3,887,446	+		Psest_3719	0.68	-1.3
3,887,446	+		Psest_3719	0.68	+0.7
3,887,447	-		Psest_3719	0.68	-0.6
3,887,447	-		Psest_3719	0.68	-0.0
3,887,447	-		Psest_3719	0.68	-0.4
3,887,447	-		Psest_3719	0.68	+1.1
3,887,447	-		Psest_3719	0.68	-0.7
3,887,447	-		Psest_3719	0.68	+1.8
3,887,466	-		Psest_3719	0.70	+0.5
3,887,466	-		Psest_3719	0.70	-0.0
3,887,574	-		Psest_3719	0.80	+0.2
3,887,574	-		Psest_3719	0.80	+0.2
3,887,586	+		Psest_3719	0.81	-0.6
3,887,586	+		Psest_3719	0.81	+0.3
3,887,587	-		Psest_3719	0.81	+0.9
3,887,587	-		Psest_3719	0.81	-1.1
3,887,587	-		Psest_3719	0.81	-0.3
3,887,587	-		Psest_3719	0.81	-0.2
3,887,587	-		Psest_3719	0.81	+1.0
3,887,707	-				+1.0
3,887,768	+				+0.7
3,887,799	-				-0.1
3,887,827	-				+0.0
3,887,827	-				+1.4
3,887,845	+				-0.1
3,887,894	-				-1.0
3,887,896	-				-0.3
3,887,896	-				+0.0
3,888,091	+				+1.2
3,888,091	+				+0.1
3,888,091	+				+0.3
3,888,092	-				-0.8
3,888,097	+				+0.4
3,888,097	+				+1.3
3,888,117	+				+0.0
3,888,118	-				-1.0
3,888,247	-		Psest_3720	0.12	-0.4
3,888,289	+		Psest_3720	0.13	+0.7
3,888,351	+		Psest_3720	0.16	+0.3
3,888,351	+		Psest_3720	0.16	+1.4
3,888,351	+		Psest_3720	0.16	+1.3
3,888,351	+		Psest_3720	0.16	+0.6
3,888,352	-		Psest_3720	0.16	-0.2
3,888,453	+		Psest_3720	0.20	+0.0
3,888,453	+		Psest_3720	0.20	+0.4
3,888,453	+		Psest_3720	0.20	-1.0
3,888,453	+		Psest_3720	0.20	-0.6
3,888,453	+		Psest_3720	0.20	+0.7
3,888,453	+		Psest_3720	0.20	+1.0
3,888,454	-		Psest_3720	0.20	-0.4
3,888,468	+		Psest_3720	0.21	+1.0
3,888,468	+		Psest_3720	0.21	+0.3
3,888,469	-		Psest_3720	0.21	+0.8
3,888,469	-		Psest_3720	0.21	-0.3
3,888,469	-		Psest_3720	0.21	-0.2
3,888,469	-		Psest_3720	0.21	+0.7
3,888,469	-		Psest_3720	0.21	+0.2
3,888,469	-		Psest_3720	0.21	-0.2
3,888,487	-		Psest_3720	0.21	+0.6
3,888,513	+		Psest_3720	0.22	+0.4
3,888,513	+		Psest_3720	0.22	+0.9
3,888,514	-		Psest_3720	0.23	+0.0
3,888,514	-		Psest_3720	0.23	+0.7
3,888,514	-		Psest_3720	0.23	+2.6
3,888,516	+		Psest_3720	0.23	+0.7
3,888,680	+		Psest_3720	0.29	+0.7
3,888,680	+		Psest_3720	0.29	+1.0
3,888,680	+		Psest_3720	0.29	+0.9
3,888,681	-		Psest_3720	0.29	+1.4
3,888,681	-		Psest_3720	0.29	+1.0
3,888,681	-		Psest_3720	0.29	+1.3
3,888,681	-		Psest_3720	0.29	+0.3
3,888,681	-		Psest_3720	0.29	-0.6
3,888,753	+		Psest_3720	0.32	+0.3
3,888,753	+		Psest_3720	0.32	+0.9
3,888,753	+		Psest_3720	0.32	+0.0
3,888,753	+		Psest_3720	0.32	+0.1
3,888,753	+		Psest_3720	0.32	+0.2
3,888,753	+		Psest_3720	0.32	+0.4
3,888,753	+		Psest_3720	0.32	-0.3
3,888,753	+		Psest_3720	0.32	-1.8
3,888,753	+		Psest_3720	0.32	+0.4
3,888,753	+		Psest_3720	0.32	+0.7
3,888,753	+		Psest_3720	0.32	+0.7
3,888,753	+		Psest_3720	0.32	+1.0
3,888,753	+		Psest_3720	0.32	+0.2
3,888,753	+		Psest_3720	0.32	-0.8
3,888,753	+		Psest_3720	0.32	+0.0
3,888,753	+		Psest_3720	0.32	-0.1
3,888,754	-		Psest_3720	0.32	+0.5
3,888,754	-		Psest_3720	0.32	-0.2
3,888,754	-		Psest_3720	0.32	+1.9
3,888,754	-		Psest_3720	0.32	-0.2
3,888,754	-		Psest_3720	0.32	-0.2
3,888,754	-		Psest_3720	0.32	-0.7
3,888,754	-		Psest_3720	0.32	-0.3
3,888,754	-		Psest_3720	0.32	+1.3
3,888,754	-		Psest_3720	0.32	+0.4
3,888,754	-		Psest_3720	0.32	+0.2
3,888,754	-		Psest_3720	0.32	+0.4
3,888,754	-		Psest_3720	0.32	+1.0
3,888,754	-		Psest_3720	0.32	+0.6
3,888,754	-		Psest_3720	0.32	+0.4
3,888,754	-		Psest_3720	0.32	-1.8
3,888,754	-		Psest_3720	0.32	+1.0
3,888,754	-		Psest_3720	0.32	+1.0
3,888,754	-		Psest_3720	0.32	-0.4
3,888,755	+		Psest_3720	0.32	+0.6
3,888,756	-		Psest_3720	0.32	+0.6