Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3694

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3692 and Psest_3693 overlap by 4 nucleotidesPsest_3693 and Psest_3694 overlap by 4 nucleotidesPsest_3694 and Psest_3695 overlap by 8 nucleotides Psest_3692: Psest_3692 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 3,855,314 to 3,856,990 _3692 Psest_3693: Psest_3693 - Glycosyltransferases involved in cell wall biogenesis, at 3,856,987 to 3,857,802 _3693 Psest_3694: Psest_3694 - Predicted acyltransferase, at 3,857,799 to 3,858,743 _3694 Psest_3695: Psest_3695 - Histidine ammonia-lyase, at 3,858,736 to 3,860,268 _3695 Position (kb) 3857 3858 3859Strain fitness (log2 ratio) -2 -1 0 1 2at 3856.887 kb on + strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.922 kb on + strandat 3856.922 kb on + strandat 3856.922 kb on + strandat 3856.923 kb on - strandat 3856.923 kb on - strandat 3856.931 kb on + strandat 3857.016 kb on - strandat 3857.016 kb on - strandat 3857.098 kb on + strand, within Psest_3693at 3857.099 kb on - strand, within Psest_3693at 3857.922 kb on + strand, within Psest_3694at 3857.923 kb on - strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.265 kb on + strand, within Psest_3694at 3858.706 kb on - strandat 3858.852 kb on - strandat 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strandat 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3859.198 kb on + strand, within Psest_3695at 3859.198 kb on + strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.281 kb on - strand, within Psest_3695at 3859.385 kb on - strand, within Psest_3695at 3859.724 kb on - strand, within Psest_3695at 3859.724 kb on - strand, within Psest_3695

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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3,856,887 + +0.8
3,856,888 - +0.0
3,856,888 - +2.0
3,856,888 - -1.2
3,856,888 - +0.0
3,856,922 + -0.8
3,856,922 + -2.5
3,856,922 + +0.0
3,856,923 - +0.0
3,856,923 - +0.0
3,856,931 + +0.7
3,857,016 - +1.0
3,857,016 - +1.0
3,857,098 + Psest_3693 0.14 +0.0
3,857,099 - Psest_3693 0.14 -0.5
3,857,922 + Psest_3694 0.13 +0.0
3,857,923 - Psest_3694 0.13 +0.5
3,857,937 + Psest_3694 0.15 +0.6
3,857,937 + Psest_3694 0.15 +0.0
3,857,938 - Psest_3694 0.15 +1.0
3,857,938 - Psest_3694 0.15 -1.0
3,857,943 + Psest_3694 0.15 +1.0
3,857,943 + Psest_3694 0.15 +1.6
3,857,983 - Psest_3694 0.19 -0.5
3,857,983 - Psest_3694 0.19 +0.0
3,858,247 + Psest_3694 0.47 +1.0
3,858,247 + Psest_3694 0.47 -0.4
3,858,247 + Psest_3694 0.47 -1.5
3,858,248 - Psest_3694 0.48 -1.0
3,858,248 - Psest_3694 0.48 -1.0
3,858,248 - Psest_3694 0.48 +0.0
3,858,248 - Psest_3694 0.48 -0.7
3,858,265 + Psest_3694 0.49 -1.7
3,858,706 - +0.7
3,858,852 - +1.0
3,858,904 + Psest_3695 0.11 -1.5
3,858,904 + Psest_3695 0.11 -0.5
3,858,904 + +1.0
3,858,904 + Psest_3695 0.11 +1.0
3,858,904 + Psest_3695 0.11 -1.0
3,858,904 + Psest_3695 0.11 +0.7
3,858,904 + Psest_3695 0.11 +1.0
3,858,904 + Psest_3695 0.11 -0.3
3,858,904 + Psest_3695 0.11 +1.0
3,858,904 + Psest_3695 0.11 -1.9
3,858,904 + Psest_3695 0.11 -0.5
3,858,904 + Psest_3695 0.11 -0.5
3,858,904 + Psest_3695 0.11 +1.0
3,858,904 + Psest_3695 0.11 -0.8
3,858,904 + Psest_3695 0.11 +1.2
3,858,904 + Psest_3695 0.11 +0.0
3,858,904 + Psest_3695 0.11 -2.4
3,858,904 + Psest_3695 0.11 +0.5
3,858,904 + Psest_3695 0.11 -1.3
3,858,904 + Psest_3695 0.11 +0.0
3,858,904 + Psest_3695 0.11 +1.0
3,858,905 - Psest_3695 0.11 -0.3
3,858,905 - Psest_3695 0.11 -1.0
3,858,905 - Psest_3695 0.11 +0.2
3,858,905 - Psest_3695 0.11 -0.3
3,858,905 - Psest_3695 0.11 +2.6
3,858,905 - Psest_3695 0.11 -0.1
3,858,905 - Psest_3695 0.11 -0.5
3,858,905 - Psest_3695 0.11 -0.3
3,858,905 - Psest_3695 0.11 +0.2
3,858,905 - Psest_3695 0.11 +0.6
3,858,905 - Psest_3695 0.11 +0.5
3,858,905 - Psest_3695 0.11 -0.5
3,858,905 - Psest_3695 0.11 -0.1
3,858,905 - Psest_3695 0.11 -1.0
3,858,905 - Psest_3695 0.11 +0.0
3,858,905 - Psest_3695 0.11 -1.0
3,858,905 - Psest_3695 0.11 -0.1
3,858,905 - Psest_3695 0.11 -0.5
3,858,905 - Psest_3695 0.11 +1.8
3,858,905 - Psest_3695 0.11 +2.0
3,859,198 + Psest_3695 0.30 +0.5
3,859,198 + Psest_3695 0.30 +1.0
3,859,199 - Psest_3695 0.30 +0.0
3,859,199 - Psest_3695 0.30 -1.3
3,859,199 - Psest_3695 0.30 +2.0
3,859,199 - Psest_3695 0.30 +2.6
3,859,199 - Psest_3695 0.30 -0.5
3,859,199 - Psest_3695 0.30 -0.5
3,859,199 - Psest_3695 0.30 -1.4
3,859,281 - Psest_3695 0.36 -0.4
3,859,385 - Psest_3695 0.42 +0.6
3,859,724 - Psest_3695 0.64 -0.4
3,859,724 - Psest_3695 0.64 +0.5

Or see this region's nucleotide sequence