Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0361 and Psest_0362 overlap by 1 nucleotides Psest_0362 and Psest_0363 are separated by 58 nucleotides
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.836 kb on + strand, within Psest_0361 at 387.905 kb on + strand, within Psest_0361 at 387.906 kb on - strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.181 kb on + strand, within Psest_0361 at 388.182 kb on - strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.346 kb on - strand, within Psest_0361 at 388.729 kb on + strand at 388.810 kb on + strand at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.904 kb on - strand, within Psest_0362 at 388.942 kb on + strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.972 kb on + strand, within Psest_0362 at 389.266 kb on + strand at 389.267 kb on - strand at 389.286 kb on + strand at 389.287 kb on - strand at 389.411 kb on + strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.441 kb on + strand at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.879 kb on + strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 387,836 + Psest_0361 0.27 +1.1 387,905 + Psest_0361 0.32 +1.1 387,906 - Psest_0361 0.32 -1.3 387,998 + Psest_0361 0.39 +0.2 387,998 + Psest_0361 0.39 +0.4 387,999 - Psest_0361 0.39 -0.5 387,999 - Psest_0361 0.39 +1.1 387,999 - Psest_0361 0.39 -0.5 387,999 - Psest_0361 0.39 -0.2 388,007 + Psest_0361 0.40 +1.1 388,007 + Psest_0361 0.40 -0.4 388,165 + Psest_0361 0.52 -0.9 388,165 + Psest_0361 0.52 +1.1 388,165 + Psest_0361 0.52 -0.5 388,165 + Psest_0361 0.52 -0.5 388,165 + Psest_0361 0.52 -0.4 388,165 + Psest_0361 0.52 +0.3 388,166 - Psest_0361 0.52 -0.4 388,166 - Psest_0361 0.52 +0.1 388,166 - Psest_0361 0.52 +0.1 388,166 - Psest_0361 0.52 -0.9 388,166 - Psest_0361 0.52 +0.1 388,166 - Psest_0361 0.52 +0.1 388,166 - Psest_0361 0.52 +0.5 388,181 + Psest_0361 0.53 -1.9 388,182 - Psest_0361 0.54 +0.1 388,304 + Psest_0361 0.63 -0.8 388,304 + Psest_0361 0.63 +0.2 388,304 + Psest_0361 0.63 -0.1 388,304 + Psest_0361 0.63 +0.1 388,304 + Psest_0361 0.63 +1.1 388,304 + Psest_0361 0.63 -0.5 388,304 + Psest_0361 0.63 +2.1 388,304 + Psest_0361 0.63 +2.4 388,305 - Psest_0361 0.63 +0.3 388,305 - Psest_0361 0.63 -1.1 388,346 - Psest_0361 0.66 +0.5 388,729 + +0.5 388,810 + +0.3 388,843 + Psest_0362 0.13 -0.4 388,843 + Psest_0362 0.13 +1.1 388,843 + Psest_0362 0.13 -1.9 388,903 + Psest_0362 0.24 +0.1 388,903 + Psest_0362 0.24 -0.9 388,904 - Psest_0362 0.24 +0.1 388,942 + Psest_0362 0.31 -0.3 388,943 - Psest_0362 0.32 -0.8 388,943 - Psest_0362 0.32 -0.9 388,972 + Psest_0362 0.37 -0.2 389,266 + -0.5 389,267 - +0.3 389,286 + +1.1 389,287 - -0.9 389,411 + +0.3 389,412 - +0.3 389,412 - +0.2 389,412 - +1.0 389,441 + +1.1 389,657 + Psest_0363 0.30 -0.5 389,657 + Psest_0363 0.30 +0.5 389,657 + Psest_0363 0.30 -2.3 389,658 - Psest_0363 0.30 -0.5 389,658 - Psest_0363 0.30 +1.1 389,658 - Psest_0363 0.30 -0.8 389,658 - Psest_0363 0.30 +1.3 389,879 + Psest_0363 0.53 +0.7 389,880 - Psest_0363 0.53 -0.5 389,880 - Psest_0363 0.53 +0.5 389,880 - Psest_0363 0.53 -0.3 389,880 - Psest_0363 0.53 +0.1 389,880 - Psest_0363 0.53 -0.9 389,880 - Psest_0363 0.53 -0.9
Or see this region's nucleotide sequence