Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3670

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,832,950	+		Psest_3668	0.42	-0.5
3,833,405	+				-0.7
3,833,405	+				+0.2
3,833,405	+				+0.9
3,833,406	-				+1.2
3,833,406	-				+0.6
3,833,406	-				-0.2
3,833,410	-				-0.1
3,833,456	+				+0.3
3,833,456	+				+2.2
3,833,457	-				-0.2
3,833,457	-				-0.1
3,833,463	+				+2.0
3,833,463	+				+0.0
3,833,530	-		Psest_3669	0.22	+0.2
3,833,541	+		Psest_3669	0.25	-0.5
3,833,541	+		Psest_3669	0.25	+0.7
3,833,542	-		Psest_3669	0.25	-1.0
3,833,694	+		Psest_3669	0.65	-1.0
3,833,695	-		Psest_3669	0.65	+0.8
3,833,695	-		Psest_3669	0.65	-0.6
3,833,695	-		Psest_3669	0.65	+0.2
3,833,696	+		Psest_3669	0.65	-0.2
3,833,696	+		Psest_3669	0.65	+1.7
3,833,696	+		Psest_3669	0.65	+0.0
3,833,745	+		Psest_3669	0.78	+0.3
3,833,834	+				+0.4
3,833,834	+				+1.3
3,833,834	+				-0.5
3,833,834	+				+1.0
3,833,834	+				+0.9
3,833,834	+				+0.2
3,833,834	+				+1.0
3,833,835	-				+1.5
3,833,835	-				+1.6
3,833,835	-				+1.5
3,833,919	+		Psest_3670	0.11	+1.7
3,833,920	-		Psest_3670	0.11	+1.5
3,833,920	-		Psest_3670	0.11	+1.4
3,834,152	+		Psest_3670	0.39	+1.6
3,834,152	+		Psest_3670	0.39	+1.1
3,834,252	+		Psest_3670	0.52	+1.6
3,834,293	+		Psest_3670	0.57	+1.8
3,834,293	+		Psest_3670	0.57	+1.5
3,834,293	+		Psest_3670	0.57	+1.7
3,834,293	+		Psest_3670	0.57	+1.3
3,834,293	+		Psest_3670	0.57	+2.3
3,834,293	+		Psest_3670	0.57	+1.0
3,834,293	+		Psest_3670	0.57	+1.3
3,834,293	+		Psest_3670	0.57	+2.2
3,834,293	+		Psest_3670	0.57	+1.8
3,834,293	+		Psest_3670	0.57	+1.3
3,834,293	+		Psest_3670	0.57	+1.8
3,834,293	+		Psest_3670	0.57	+1.6
3,834,293	+		Psest_3670	0.57	+2.2
3,834,293	+		Psest_3670	0.57	+1.3
3,834,293	+		Psest_3670	0.57	+1.2
3,834,294	-		Psest_3670	0.57	+1.2
3,834,294	-		Psest_3670	0.57	+1.4
3,834,294	-		Psest_3670	0.57	+1.2
3,834,294	-		Psest_3670	0.57	-1.4
3,834,294	-		Psest_3670	0.57	+0.6
3,834,294	-		Psest_3670	0.57	-0.1
3,834,294	-		Psest_3670	0.57	+1.2
3,834,294	-		Psest_3670	0.57	+0.9
3,834,294	-		Psest_3670	0.57	+1.0
3,834,294	-		Psest_3670	0.57	+0.5
3,834,294	-		Psest_3670	0.57	+1.8
3,834,294	-		Psest_3670	0.57	+0.6
3,834,294	-		Psest_3670	0.57	+1.0
3,834,294	-		Psest_3670	0.57	+2.5
3,834,362	+		Psest_3670	0.65	+2.7
3,834,362	+		Psest_3670	0.65	+1.7
3,834,362	+		Psest_3670	0.65	+1.3
3,834,362	+		Psest_3670	0.65	+1.3
3,834,362	+		Psest_3670	0.65	+1.6
3,834,362	+		Psest_3670	0.65	+1.4
3,834,362	+		Psest_3670	0.65	+1.3
3,834,362	+		Psest_3670	0.65	+1.3
3,834,362	+		Psest_3670	0.65	+1.6
3,834,363	-		Psest_3670	0.65	+1.4
3,834,363	-		Psest_3670	0.65	+1.6
3,834,363	-		Psest_3670	0.65	+0.6
3,834,363	-		Psest_3670	0.65	+0.7
3,834,363	-		Psest_3670	0.65	+0.6
3,834,373	+		Psest_3670	0.66	+1.3
3,834,373	+		Psest_3670	0.66	+1.6
3,834,374	-		Psest_3670	0.66	+1.0
3,834,739	+		Psest_3671	0.27	+0.3
3,834,739	+		Psest_3671	0.27	+0.2
3,834,739	+		Psest_3671	0.27	+0.1
3,834,739	+		Psest_3671	0.27	-0.5
3,834,739	+		Psest_3671	0.27	+1.0
3,834,740	-		Psest_3671	0.28	+0.0
3,834,740	-		Psest_3671	0.28	-0.1
3,834,754	-		Psest_3671	0.32	+0.6
3,834,841	+		Psest_3671	0.58	+0.0
3,834,875	-		Psest_3671	0.68	+0.2
3,834,875	-		Psest_3671	0.68	-0.2
3,834,905	-		Psest_3671	0.78	+0.2
3,834,930	-		Psest_3671	0.85	-0.5
3,834,930	-		Psest_3671	0.85	+1.0
3,834,939	+		Psest_3671	0.88	+0.2
3,834,939	+		Psest_3671	0.88	+0.5
3,834,939	+		Psest_3671	0.88	-0.4
3,834,940	-		Psest_3671	0.88	-1.2
3,834,940	-		Psest_3671	0.88	+0.5
3,834,940	-		Psest_3671	0.88	+0.4
3,834,940	-		Psest_3671	0.88	+0.5
3,834,940	-		Psest_3671	0.88	+0.4
3,834,940	-		Psest_3671	0.88	-0.5
3,834,940	-		Psest_3671	0.88	+1.0
3,834,943	+		Psest_3671	0.89	-1.0
3,834,944	-		Psest_3671	0.89	+0.2
3,835,048	-				-0.2
3,835,086	+				+0.2
3,835,086	+				+0.2
3,835,087	-				+0.7
3,835,111	+				+1.5
3,835,111	+				+0.7
3,835,112	-				+0.1
3,835,112	-				+0.0
3,835,157	+				-0.1
3,835,158	-				-0.2
3,835,158	-				+0.7
3,835,158	-				-0.8
3,835,158	-				-1.8
3,835,158	-				+1.2
3,835,158	-				+0.3
3,835,303	+				-0.5
3,835,318	+				-0.1
3,835,319	-				+0.8
3,835,319	-				-0.2
3,835,319	-				+1.4
3,835,351	+				+0.8
3,835,351	+				-0.1
3,835,351	+				+0.3
3,835,352	-				-1.5
3,835,352	-				+1.0
3,835,352	-				-1.3
3,835,352	-				+2.0
3,835,408	-				+0.8
3,835,519	+		Psest_3672	0.14	+0.0
3,835,520	-		Psest_3672	0.14	+0.7
3,835,520	-		Psest_3672	0.14	+0.7
3,835,520	-		Psest_3672	0.14	+0.0
3,835,567	+		Psest_3672	0.17	+3.0
3,835,645	+		Psest_3672	0.21	+0.2
3,835,645	+		Psest_3672	0.21	-0.3
3,835,646	-		Psest_3672	0.21	+0.9
3,835,646	-		Psest_3672	0.21	+0.3
3,835,646	-		Psest_3672	0.21	-0.1