Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0035 and Psest_0036 overlap by 22 nucleotides Psest_0036 and Psest_0037 are separated by 183 nucleotides
Psest_0035: Psest_0035 - hypothetical protein, at 35,413 to 36,939
_0035
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.040 kb on + strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.410 kb on - strand, within Psest_0035 at 36.574 kb on + strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.578 kb on - strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.602 kb on - strand, within Psest_0035 at 37.064 kb on - strand at 37.064 kb on - strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.079 kb on - strand at 37.079 kb on - strand at 37.262 kb on - strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.571 kb on - strand, within Psest_0036 at 37.576 kb on + strand, within Psest_0036 at 37.577 kb on - strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.660 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 38.038 kb on + strand, within Psest_0036 at 38.203 kb on + strand, within Psest_0036 at 38.256 kb on + strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.429 kb on - strand, within Psest_0036 at 38.771 kb on - strand at 38.771 kb on - strand at 38.771 kb on - strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.919 kb on + strand at 39.307 kb on - strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 36,040 + Psest_0035 0.41 -0.6 36,041 - Psest_0035 0.41 +0.2 36,041 - Psest_0035 0.41 +0.2 36,303 - Psest_0035 0.58 +0.2 36,303 - Psest_0035 0.58 -2.9 36,410 - Psest_0035 0.65 -1.6 36,574 + Psest_0035 0.76 +0.2 36,575 - Psest_0035 0.76 +1.2 36,575 - Psest_0035 0.76 +1.2 36,575 - Psest_0035 0.76 +2.8 36,578 - Psest_0035 0.76 +0.2 36,601 + Psest_0035 0.78 +0.3 36,601 + Psest_0035 0.78 +1.8 36,601 + Psest_0035 0.78 +0.2 36,602 - Psest_0035 0.78 +1.2 37,064 - +0.6 37,064 - -1.3 37,078 + -0.4 37,078 + +2.2 37,078 + -0.4 37,078 + +0.2 37,078 + -0.7 37,078 + +0.2 37,078 + -0.9 37,078 + +2.5 37,079 - +1.2 37,079 - +0.6 37,262 - Psest_0036 0.20 +0.2 37,270 + Psest_0036 0.21 -0.9 37,270 + Psest_0036 0.21 -0.4 37,270 + Psest_0036 0.21 +2.2 37,270 + Psest_0036 0.21 +1.2 37,270 + Psest_0036 0.21 +0.6 37,270 + Psest_0036 0.21 -0.8 37,271 - Psest_0036 0.21 -0.4 37,271 - Psest_0036 0.21 -1.1 37,271 - Psest_0036 0.21 +1.2 37,531 + Psest_0036 0.36 +0.2 37,531 + Psest_0036 0.36 -0.6 37,532 - Psest_0036 0.36 +1.2 37,532 - Psest_0036 0.36 -1.2 37,532 - Psest_0036 0.36 +1.2 37,571 - Psest_0036 0.38 -0.8 37,576 + Psest_0036 0.39 +2.2 37,577 - Psest_0036 0.39 +0.2 37,615 + Psest_0036 0.41 +2.2 37,615 + Psest_0036 0.41 +1.2 37,654 + Psest_0036 0.43 +0.2 37,654 + Psest_0036 0.43 -1.1 37,654 + Psest_0036 0.43 +0.2 37,655 - Psest_0036 0.43 -1.8 37,655 - Psest_0036 0.43 -0.8 37,660 + Psest_0036 0.44 -0.4 37,855 + Psest_0036 0.55 -1.1 37,855 + Psest_0036 0.55 -1.7 37,855 + Psest_0036 0.55 +1.6 38,038 + Psest_0036 0.66 -0.8 38,203 + Psest_0036 0.75 -0.6 38,256 + Psest_0036 0.79 +0.5 38,257 - Psest_0036 0.79 -1.8 38,257 - Psest_0036 0.79 -0.4 38,429 - Psest_0036 0.89 +0.6 38,771 - +1.2 38,771 - -1.4 38,771 - -1.9 38,822 + +2.2 38,822 + -0.4 38,822 + +0.6 38,823 - -0.2 38,823 - +1.2 38,823 - +0.2 38,823 - +1.8 38,823 - +0.6 38,823 - +1.2 38,823 - -2.2 38,823 - +1.8 38,823 - -2.1 38,823 - -0.1 38,823 - -0.4 38,823 - +0.2 38,823 - +0.5 38,826 + +0.8 38,826 + +0.9 38,826 + +0.6 38,826 + +1.2 38,826 + +0.2 38,826 + -1.5 38,826 + +0.9 38,826 + +0.9 38,826 + +0.6 38,826 + +0.5 38,826 + +0.3 38,826 + +1.2 38,826 + -0.7 38,826 + +0.9 38,826 + -1.1 38,826 + -1.9 38,826 + +1.2 38,827 - +0.2 38,827 - +0.2 38,827 - +0.2 38,827 - +1.2 38,827 - -0.4 38,827 - +1.8 38,827 - +1.2 38,827 - +1.2 38,827 - +1.2 38,827 - +0.2 38,827 - -0.3 38,827 - +0.2 38,827 - -0.4 38,827 - -0.6 38,827 - +1.8 38,827 - -0.8 38,827 - -0.1 38,827 - +1.2 38,827 - +1.2 38,827 - +1.2 38,827 - +0.2 38,827 - +1.0 38,827 - +0.5 38,827 - +0.6 38,827 - -0.4 38,827 - -0.4 38,827 - -1.4 38,827 - +1.7 38,827 - +0.5 38,827 - +0.8 38,827 - -0.8 38,827 - +0.1 38,827 - +2.2 38,827 - -0.6 38,827 - +1.2 38,827 - +1.2 38,827 - +0.6 38,827 - -0.1 38,827 - -0.7 38,827 - +1.5 38,827 - -1.7 38,919 + -0.5 39,307 - Psest_0037 0.24 +0.2 39,441 + Psest_0037 0.31 -0.8 39,441 + Psest_0037 0.31 -0.4 39,441 + Psest_0037 0.31 +0.5 39,441 + Psest_0037 0.31 -0.1 39,441 + Psest_0037 0.31 +1.2 39,441 + Psest_0037 0.31 +0.2 39,441 + Psest_0037 0.31 +0.2 39,441 + Psest_0037 0.31 -0.2 39,441 + Psest_0037 0.31 -0.9 39,441 + Psest_0037 0.31 +0.2 39,441 + Psest_0037 0.31 +1.2 39,441 + Psest_0037 0.31 -0.4 39,442 - Psest_0037 0.31 +0.2 39,442 - Psest_0037 0.31 -1.6 39,442 - Psest_0037 0.31 +0.8 39,442 - Psest_0037 0.31 +1.2 39,442 - Psest_0037 0.31 +1.0 39,442 - Psest_0037 0.31 -1.4 39,555 + Psest_0037 0.36 -0.4 39,555 + Psest_0037 0.36 -1.1 39,564 + Psest_0037 0.37 +1.2 39,564 + Psest_0037 0.37 +0.2 39,564 + Psest_0037 0.37 +1.2 39,565 - Psest_0037 0.37 -1.1 39,565 - Psest_0037 0.37 -0.9 39,565 - Psest_0037 0.37 +1.0 39,565 - Psest_0037 0.37 -1.1 39,565 - Psest_0037 0.37 -0.6 39,565 - Psest_0037 0.37 +0.7 39,565 - Psest_0037 0.37 +2.2
Or see this region's nucleotide sequence