Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3662 and Psest_3663 are separated by 1 nucleotides Psest_3663 and Psest_3664 overlap by 4 nucleotides Psest_3664 and Psest_3665 are separated by 90 nucleotides
Psest_3662: Psest_3662 - DnaJ-domain-containing proteins 1, at 3,824,733 to 3,825,500
_3662
Psest_3663: Psest_3663 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 3,825,502 to 3,826,173
_3663
Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228
_3664
Psest_3665: Psest_3665 - Organic solvent tolerance protein OstA, at 3,827,319 to 3,830,111
_3665
Position (kb)
3826
3827
3828 Strain fitness (log2 ratio)
-2
-1
0
1 at 3825.267 kb on - strand, within Psest_3662 at 3825.520 kb on + strand at 3825.520 kb on + strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3826.256 kb on - strand at 3826.708 kb on + strand, within Psest_3664 at 3826.861 kb on + strand, within Psest_3664 at 3826.861 kb on + strand, within Psest_3664 at 3826.862 kb on - strand, within Psest_3664
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 3,825,267 - Psest_3662 0.70 +1.6 3,825,520 + +0.5 3,825,520 + -1.0 3,825,521 - -0.1 3,825,521 - -1.8 3,825,521 - -1.5 3,825,521 - -2.7 3,825,521 - -0.1 3,826,256 - -1.8 3,826,708 + Psest_3664 0.51 +0.5 3,826,861 + Psest_3664 0.65 +1.4 3,826,861 + Psest_3664 0.65 +0.0 3,826,862 - Psest_3664 0.65 +1.0
Or see this region's nucleotide sequence