Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3422

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,589,759	+		Psest_3420	0.55	+1.4
3,589,760	-		Psest_3420	0.55	+0.5
3,589,826	+		Psest_3420	0.63	-0.2
3,589,827	-		Psest_3420	0.63	-0.0
3,589,827	-		Psest_3420	0.63	+0.8
3,589,827	-		Psest_3420	0.63	+0.5
3,589,956	+		Psest_3420	0.77	+0.2
3,589,957	-		Psest_3420	0.77	-0.6
3,590,056	+		Psest_3420	0.89	-0.8
3,590,062	+		Psest_3420	0.89	-0.7
3,590,062	+		Psest_3420	0.89	-0.7
3,590,062	+		Psest_3420	0.89	-0.1
3,590,062	+		Psest_3420	0.89	+0.5
3,590,063	-		Psest_3420	0.89	-0.9
3,590,063	-		Psest_3420	0.89	+0.5
3,590,063	-		Psest_3420	0.89	+0.3
3,590,063	-		Psest_3420	0.89	+0.0
3,590,063	-		Psest_3420	0.89	+1.1
3,590,114	-				+0.5
3,590,114	-				-0.1
3,590,236	+				-0.4
3,590,245	+				+0.1
3,590,245	+				+0.3
3,590,246	-				+0.9
3,590,246	-				-1.0
3,590,311	-				+0.9
3,590,311	-				-0.1
3,590,347	+				-0.6
3,590,392	+				+0.2
3,590,392	+				-0.1
3,590,392	+				-0.3
3,590,392	+				+0.1
3,590,392	+				-0.3
3,590,392	+				+0.4
3,590,392	+				-0.6
3,590,393	-				+0.6
3,590,393	-				+1.4
3,590,393	-				-0.1
3,590,416	+				-1.2
3,590,417	-				-0.6
3,590,475	-		Psest_3421	0.40	-0.2
3,590,482	+		Psest_3421	0.44	-0.1
3,590,482	+		Psest_3421	0.44	-0.3
3,590,483	-		Psest_3421	0.44	+0.0
3,590,483	-		Psest_3421	0.44	+0.8
3,590,483	-		Psest_3421	0.44	+0.2
3,590,509	+		Psest_3421	0.59	-2.0
3,590,510	-		Psest_3421	0.60	+0.7
3,590,669	+				-0.5
3,590,669	+				+0.7
3,590,669	+				+0.0
3,590,670	-				+0.1
3,590,689	+				+0.1
3,590,690	-				+1.1
3,590,690	-				+0.4
3,590,690	-				-0.3
3,590,693	+				-1.4
3,590,693	+				-0.1
3,590,694	-				-0.3
3,590,694	-				+0.6
3,590,706	-				+0.2
3,590,769	+				+0.5
3,590,769	+				-1.0
3,590,769	+				+0.0
3,590,770	-				+0.4
3,590,770	-				-0.0
3,590,865	-		Psest_3422	0.39	+1.7
3,590,905	-		Psest_3422	0.52	+0.7
3,590,922	-		Psest_3422	0.58	+0.2
3,590,922	-		Psest_3422	0.58	+0.2
3,590,922	-		Psest_3422	0.58	-0.6
3,590,922	-		Psest_3422	0.58	-0.3
3,590,946	-		Psest_3422	0.66	+0.8
3,591,007	-		Psest_3422	0.85	+0.9
3,591,049	+				-0.7
3,591,049	+				-0.1
3,591,049	+				-1.0
3,591,049	+				-0.4
3,591,049	+				-0.9
3,591,049	+				+0.1
3,591,076	+				-0.2
3,591,094	+				+0.7
3,591,094	+				-0.3
3,591,094	+				-0.4
3,591,094	+				+0.9
3,591,105	+				-0.5
3,591,105	+				-0.6
3,591,106	-				+0.0
3,591,106	-				-0.2
3,591,109	+				-0.3
3,591,109	+				-0.2
3,591,109	+				-0.1
3,591,109	+				+0.2
3,591,110	-				-1.0
3,591,110	-				+2.2
3,591,110	-				+0.1
3,591,110	-				+0.6
3,591,110	-				+0.6
3,591,111	+				+0.7
3,591,111	+				-0.1
3,591,111	+				-0.3
3,591,111	+				+0.2
3,591,111	+				-0.4
3,591,111	+				+1.1
3,591,112	-				+0.7
3,591,112	-				-1.3
3,591,112	-				+0.1
3,591,160	+				-0.2
3,591,162	+				+0.6
3,591,162	+				-1.3
3,591,162	+				+1.1
3,591,162	+				-0.3
3,591,162	+				-0.2
3,591,162	+				-1.3
3,591,162	+				+0.3
3,591,162	+				+0.2
3,591,162	+				-0.8
3,591,162	+				+0.9
3,591,162	+				+0.1
3,591,162	+				+1.2
3,591,162	+				+0.5
3,591,162	+				+0.6
3,591,162	+				+0.8
3,591,162	+				-0.8
3,591,162	+				+0.9
3,591,162	+				-0.4
3,591,162	+				+1.0
3,591,162	+				+0.1
3,591,162	+				+0.3
3,591,162	+				+0.3
3,591,162	+				+0.4
3,591,162	+				-0.4
3,591,162	+				+0.5
3,591,162	+				-0.3
3,591,162	+				-0.2
3,591,162	+				+0.1
3,591,162	+				-0.1
3,591,162	+				+0.8
3,591,163	-				-0.4
3,591,163	-				+1.9
3,591,163	-				-0.9
3,591,163	-				+0.0
3,591,163	-				-0.5
3,591,163	-				+1.6
3,591,163	-				-1.2
3,591,163	-				+0.2
3,591,163	-				+0.2
3,591,163	-				-0.6
3,591,163	-				-0.6
3,591,163	-				-0.3
3,591,163	-				-0.3
3,591,163	-				-0.5
3,591,163	-				-0.8
3,591,163	-				+0.3
3,591,163	-				-0.3
3,591,163	-				+0.2
3,591,163	-				-0.3
3,591,163	-				-0.5
3,591,163	-				-0.1
3,591,163	-				-0.5
3,591,163	-				-0.1
3,591,163	-				-0.3
3,591,163	-				-1.4
3,591,163	-				-1.3
3,591,163	-				+0.5
3,591,163	-				-1.1
3,591,163	-				-0.3
3,591,163	-				-0.4
3,591,163	-				+0.7
3,591,163	-				-0.8
3,591,163	-				-0.3
3,591,163	-				+0.8
3,591,163	-				-0.9
3,591,163	-				-0.5
3,591,163	-				-0.2
3,591,163	-				-0.8
3,591,163	-				+0.6
3,591,163	-				-1.5
3,591,163	-				-1.0
3,591,224	+				+0.0
3,591,250	-		Psest_3423	0.13	+0.2
3,591,297	-		Psest_3423	0.21	+1.1
3,591,315	+		Psest_3423	0.24	+0.8
3,591,315	+		Psest_3423	0.24	+0.5
3,591,315	+		Psest_3423	0.24	-0.0
3,591,338	+		Psest_3423	0.27	+0.4
3,591,338	+		Psest_3423	0.27	-0.2
3,591,338	+		Psest_3423	0.27	+0.1
3,591,338	+		Psest_3423	0.27	-0.4
3,591,338	+		Psest_3423	0.27	+0.2
3,591,338	+		Psest_3423	0.27	+0.3
3,591,338	+		Psest_3423	0.27	+0.1
3,591,338	+		Psest_3423	0.27	+0.0
3,591,338	+		Psest_3423	0.27	-0.1
3,591,338	+		Psest_3423	0.27	+0.2
3,591,338	+		Psest_3423	0.27	+0.4
3,591,338	+		Psest_3423	0.27	+0.4
3,591,338	+		Psest_3423	0.27	-0.4
3,591,338	+		Psest_3423	0.27	-0.0
3,591,338	+		Psest_3423	0.27	-0.8
3,591,339	-		Psest_3423	0.27	+0.7
3,591,339	-		Psest_3423	0.27	+0.0
3,591,339	-		Psest_3423	0.27	-0.6
3,591,339	-		Psest_3423	0.27	+0.1
3,591,339	-		Psest_3423	0.27	-0.5
3,591,339	-		Psest_3423	0.27	-0.5
3,591,339	-		Psest_3423	0.27	+0.1
3,591,339	-		Psest_3423	0.27	-0.4
3,591,339	-		Psest_3423	0.27	-0.2
3,591,339	-		Psest_3423	0.27	-0.2
3,591,339	-		Psest_3423	0.27	-0.5
3,591,339	-		Psest_3423	0.27	+0.2
3,591,339	-		Psest_3423	0.27	-0.4
3,591,339	-		Psest_3423	0.27	-0.4
3,591,339	-		Psest_3423	0.27	-1.1
3,591,339	-		Psest_3423	0.27	-0.4
3,591,339	-		Psest_3423	0.27	+0.1
3,591,339	-		Psest_3423	0.27	-0.6
3,591,339	-		Psest_3423	0.27	+0.4
3,591,393	-		Psest_3423	0.36	-0.4
3,591,393	-		Psest_3423	0.36	-1.0
3,591,421	-		Psest_3423	0.41	-1.7
3,591,472	+		Psest_3423	0.49	+0.5
3,591,472	+		Psest_3423	0.49	-0.1
3,591,472	+		Psest_3423	0.49	+0.8
3,591,473	-		Psest_3423	0.49	+1.1
3,591,473	-		Psest_3423	0.49	+0.9
3,591,608	-		Psest_3423	0.71	-0.1
3,591,640	+		Psest_3423	0.76	+1.0
3,591,655	+		Psest_3423	0.78	+1.4
3,591,656	-		Psest_3423	0.78	+0.0
3,591,656	-		Psest_3423	0.78	+0.5
3,591,705	+		Psest_3423	0.86	+0.8
3,591,705	+		Psest_3423	0.86	+0.1
3,591,705	+		Psest_3423	0.86	-1.1
3,591,705	+		Psest_3423	0.86	+0.6
3,591,706	-		Psest_3423	0.86	+0.4
3,591,706	-		Psest_3423	0.86	+0.9
3,591,706	-		Psest_3423	0.86	-1.1
3,591,706	-		Psest_3423	0.86	-0.1
3,591,706	-		Psest_3423	0.86	+1.3
3,591,739	+				+1.1
3,591,770	+				+1.1
3,591,770	+				+0.2
3,591,774	+				+0.2
3,591,774	+				+0.1
3,591,775	-				-1.6
3,591,866	-				+0.2
3,591,953	+				-0.6
3,591,954	-				-0.1
3,591,954	-				+0.3
3,592,012	-				+0.1
3,592,038	+				-0.1
3,592,050	+				+0.7