Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3408

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3407 and Psest_3408 are separated by 31 nucleotidesPsest_3408 and Psest_3409 are separated by 104 nucleotidesPsest_3409 and Psest_3410 overlap by 4 nucleotides Psest_3407: Psest_3407 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 3,576,550 to 3,579,753 _3407 Psest_3408: Psest_3408 - Predicted transcriptional regulators, at 3,579,785 to 3,580,006 _3408 Psest_3409: Psest_3409 - hypothetical protein, at 3,580,111 to 3,580,698 _3409 Psest_3410: Psest_3410 - DNA or RNA helicases of superfamily II, at 3,580,695 to 3,582,089 _3410 Position (kb) 3579 3580 3581Strain fitness (log2 ratio) -1 0 1 2at 3578.791 kb on + strand, within Psest_3407at 3578.791 kb on + strand, within Psest_3407at 3578.791 kb on + strand, within Psest_3407at 3578.792 kb on - strand, within Psest_3407at 3578.792 kb on - strand, within Psest_3407at 3578.792 kb on - strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.794 kb on + strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.795 kb on - strand, within Psest_3407at 3578.799 kb on + strand, within Psest_3407at 3578.799 kb on + strand, within Psest_3407at 3578.799 kb on + strand, within Psest_3407at 3578.800 kb on - strand, within Psest_3407at 3578.800 kb on - strand, within Psest_3407at 3578.800 kb on - strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.839 kb on + strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.840 kb on - strand, within Psest_3407at 3578.871 kb on + strand, within Psest_3407at 3578.872 kb on - strand, within Psest_3407at 3578.872 kb on - strand, within Psest_3407at 3578.872 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.876 kb on - strand, within Psest_3407at 3578.947 kb on + strand, within Psest_3407at 3578.947 kb on + strand, within Psest_3407at 3578.947 kb on + strand, within Psest_3407at 3578.947 kb on + strand, within Psest_3407at 3578.948 kb on - strand, within Psest_3407at 3578.948 kb on - strand, within Psest_3407at 3578.950 kb on + strand, within Psest_3407at 3578.951 kb on - strand, within Psest_3407at 3578.951 kb on - strand, within Psest_3407at 3578.951 kb on - strand, within Psest_3407at 3579.185 kb on - strand, within Psest_3407at 3579.185 kb on - strand, within Psest_3407at 3579.185 kb on - strand, within Psest_3407at 3579.217 kb on + strand, within Psest_3407at 3579.260 kb on + strand, within Psest_3407at 3579.261 kb on - strand, within Psest_3407at 3579.273 kb on - strand, within Psest_3407at 3579.273 kb on - strand, within Psest_3407at 3579.273 kb on - strand, within Psest_3407at 3579.287 kb on + strand, within Psest_3407at 3579.288 kb on - strand, within Psest_3407at 3579.332 kb on + strand, within Psest_3407at 3579.332 kb on + strand, within Psest_3407at 3579.332 kb on + strand, within Psest_3407at 3579.332 kb on + strand, within Psest_3407at 3579.332 kb on + strand, within Psest_3407at 3579.333 kb on - strand, within Psest_3407at 3579.333 kb on - strand, within Psest_3407at 3579.333 kb on - strand, within Psest_3407at 3579.359 kb on - strand, within Psest_3407at 3579.450 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.533 kb on + strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.534 kb on - strandat 3579.639 kb on - strandat 3579.690 kb on - strandat 3579.690 kb on - strandat 3579.732 kb on + strandat 3579.733 kb on - strandat 3579.773 kb on + strandat 3579.773 kb on + strandat 3579.773 kb on + strandat 3579.773 kb on + strandat 3579.773 kb on + strandat 3579.786 kb on + strandat 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.900 kb on + strand, within Psest_3408at 3579.901 kb on - strand, within Psest_3408at 3579.901 kb on - strand, within Psest_3408at 3580.000 kb on + strandat 3580.001 kb on - strandat 3580.001 kb on - strandat 3580.001 kb on - strandat 3580.036 kb on + strandat 3580.037 kb on - strandat 3580.147 kb on + strandat 3580.147 kb on + strandat 3580.148 kb on - strandat 3580.207 kb on + strand, within Psest_3409at 3580.261 kb on + strand, within Psest_3409at 3580.336 kb on + strand, within Psest_3409at 3580.337 kb on - strand, within Psest_3409at 3580.337 kb on - strand, within Psest_3409at 3580.556 kb on - strand, within Psest_3409at 3580.575 kb on + strand, within Psest_3409at 3580.575 kb on + strand, within Psest_3409at 3580.575 kb on + strand, within Psest_3409at 3580.576 kb on - strand, within Psest_3409at 3580.576 kb on - strand, within Psest_3409at 3580.668 kb on + strandat 3580.730 kb on + strandat 3580.731 kb on - strandat 3580.731 kb on - strandat 3580.736 kb on + strandat 3580.736 kb on + strandat 3580.889 kb on - strand, within Psest_3410at 3580.889 kb on - strand, within Psest_3410at 3580.924 kb on + strand, within Psest_3410at 3580.924 kb on + strand, within Psest_3410at 3580.925 kb on - strand, within Psest_3410at 3580.925 kb on - strand, within Psest_3410at 3580.968 kb on + strand, within Psest_3410at 3580.969 kb on - strand, within Psest_3410at 3580.969 kb on - strand, within Psest_3410at 3580.974 kb on + strand, within Psest_3410at 3580.975 kb on - strand, within Psest_3410at 3580.975 kb on - strand, within Psest_3410at 3580.975 kb on - strand, within Psest_3410at 3580.975 kb on - strand, within Psest_3410at 3580.989 kb on + strand, within Psest_3410

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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3,578,791 + Psest_3407 0.70 +1.4
3,578,791 + Psest_3407 0.70 -0.5
3,578,791 + Psest_3407 0.70 +0.2
3,578,792 - Psest_3407 0.70 +0.5
3,578,792 - Psest_3407 0.70 +1.1
3,578,792 - Psest_3407 0.70 +0.7
3,578,794 + Psest_3407 0.70 +0.4
3,578,794 + Psest_3407 0.70 -0.2
3,578,794 + Psest_3407 0.70 +0.9
3,578,794 + Psest_3407 0.70 +1.1
3,578,794 + Psest_3407 0.70 +0.1
3,578,794 + Psest_3407 0.70 -0.0
3,578,794 + Psest_3407 0.70 +0.3
3,578,794 + Psest_3407 0.70 -0.2
3,578,794 + Psest_3407 0.70 +0.6
3,578,794 + Psest_3407 0.70 -0.0
3,578,794 + Psest_3407 0.70 +0.9
3,578,794 + Psest_3407 0.70 +0.1
3,578,795 - Psest_3407 0.70 +0.6
3,578,795 - Psest_3407 0.70 -0.1
3,578,795 - Psest_3407 0.70 +0.6
3,578,795 - Psest_3407 0.70 +0.5
3,578,795 - Psest_3407 0.70 -0.3
3,578,795 - Psest_3407 0.70 +0.7
3,578,795 - Psest_3407 0.70 -0.9
3,578,795 - Psest_3407 0.70 -1.6
3,578,795 - Psest_3407 0.70 -0.0
3,578,795 - Psest_3407 0.70 -0.4
3,578,795 - Psest_3407 0.70 +0.6
3,578,795 - Psest_3407 0.70 +0.3
3,578,795 - Psest_3407 0.70 +0.1
3,578,795 - Psest_3407 0.70 +0.4
3,578,795 - Psest_3407 0.70 +0.0
3,578,799 + Psest_3407 0.70 +0.7
3,578,799 + Psest_3407 0.70 +1.1
3,578,799 + Psest_3407 0.70 +1.0
3,578,800 - Psest_3407 0.70 -0.2
3,578,800 - Psest_3407 0.70 -0.6
3,578,800 - Psest_3407 0.70 +1.2
3,578,839 + Psest_3407 0.71 +0.4
3,578,839 + Psest_3407 0.71 -0.4
3,578,839 + Psest_3407 0.71 +0.6
3,578,839 + Psest_3407 0.71 +1.4
3,578,839 + Psest_3407 0.71 +0.7
3,578,839 + Psest_3407 0.71 +0.3
3,578,839 + Psest_3407 0.71 +0.3
3,578,839 + Psest_3407 0.71 +0.7
3,578,839 + Psest_3407 0.71 -0.1
3,578,839 + Psest_3407 0.71 +0.7
3,578,839 + Psest_3407 0.71 +0.1
3,578,840 - Psest_3407 0.71 +0.7
3,578,840 - Psest_3407 0.71 +1.2
3,578,840 - Psest_3407 0.71 -0.6
3,578,840 - Psest_3407 0.71 +1.1
3,578,840 - Psest_3407 0.71 +0.7
3,578,840 - Psest_3407 0.71 +0.4
3,578,840 - Psest_3407 0.71 +1.3
3,578,840 - Psest_3407 0.71 +0.1
3,578,840 - Psest_3407 0.71 -0.0
3,578,840 - Psest_3407 0.71 +0.9
3,578,871 + Psest_3407 0.72 +0.1
3,578,872 - Psest_3407 0.72 -0.0
3,578,872 - Psest_3407 0.72 +0.2
3,578,872 - Psest_3407 0.72 +0.1
3,578,876 - Psest_3407 0.73 +0.3
3,578,876 - Psest_3407 0.73 +0.3
3,578,876 - Psest_3407 0.73 +0.2
3,578,876 - Psest_3407 0.73 -0.3
3,578,876 - Psest_3407 0.73 +0.9
3,578,876 - Psest_3407 0.73 +0.6
3,578,876 - Psest_3407 0.73 -0.8
3,578,876 - Psest_3407 0.73 +0.4
3,578,876 - Psest_3407 0.73 +0.9
3,578,876 - Psest_3407 0.73 -0.0
3,578,876 - Psest_3407 0.73 +0.7
3,578,947 + Psest_3407 0.75 +0.1
3,578,947 + Psest_3407 0.75 +0.3
3,578,947 + Psest_3407 0.75 -0.5
3,578,947 + Psest_3407 0.75 +1.4
3,578,948 - Psest_3407 0.75 +0.9
3,578,948 - Psest_3407 0.75 +0.4
3,578,950 + Psest_3407 0.75 +0.1
3,578,951 - Psest_3407 0.75 +0.8
3,578,951 - Psest_3407 0.75 +0.3
3,578,951 - Psest_3407 0.75 +0.3
3,579,185 - Psest_3407 0.82 +0.3
3,579,185 - Psest_3407 0.82 +0.2
3,579,185 - Psest_3407 0.82 -1.4
3,579,217 + Psest_3407 0.83 +0.0
3,579,260 + Psest_3407 0.85 +1.1
3,579,261 - Psest_3407 0.85 +0.5
3,579,273 - Psest_3407 0.85 -0.0
3,579,273 - Psest_3407 0.85 -0.3
3,579,273 - Psest_3407 0.85 -0.1
3,579,287 + Psest_3407 0.85 -0.3
3,579,288 - Psest_3407 0.85 +0.8
3,579,332 + Psest_3407 0.87 +0.1
3,579,332 + Psest_3407 0.87 +0.7
3,579,332 + Psest_3407 0.87 +0.1
3,579,332 + Psest_3407 0.87 +0.8
3,579,332 + Psest_3407 0.87 +0.2
3,579,333 - Psest_3407 0.87 +0.5
3,579,333 - Psest_3407 0.87 -0.3
3,579,333 - Psest_3407 0.87 +0.1
3,579,359 - Psest_3407 0.88 +0.3
3,579,450 + +0.1
3,579,533 + +0.4
3,579,533 + -0.2
3,579,533 + -0.1
3,579,533 + +0.0
3,579,533 + +0.5
3,579,533 + +0.4
3,579,533 + +0.6
3,579,534 - -0.3
3,579,534 - -0.3
3,579,534 - +0.6
3,579,534 - +0.6
3,579,534 - +1.6
3,579,534 - +0.8
3,579,534 - +2.0
3,579,534 - -1.3
3,579,534 - +0.4
3,579,534 - +0.4
3,579,639 - +1.1
3,579,690 - +0.4
3,579,690 - -0.0
3,579,732 + +1.7
3,579,733 - +0.2
3,579,773 + +0.3
3,579,773 + -0.4
3,579,773 + -1.0
3,579,773 + -0.1
3,579,773 + +0.4
3,579,786 + +0.9
3,579,900 + Psest_3408 0.52 +0.5
3,579,900 + Psest_3408 0.52 +0.4
3,579,900 + Psest_3408 0.52 +0.1
3,579,900 + Psest_3408 0.52 +0.2
3,579,900 + Psest_3408 0.52 +0.6
3,579,900 + Psest_3408 0.52 +0.1
3,579,900 + Psest_3408 0.52 +0.3
3,579,900 + Psest_3408 0.52 +0.4
3,579,900 + Psest_3408 0.52 +0.7
3,579,901 - Psest_3408 0.52 +0.8
3,579,901 - Psest_3408 0.52 +0.5
3,580,000 + -0.2
3,580,001 - -0.3
3,580,001 - +0.1
3,580,001 - +0.5
3,580,036 + +0.7
3,580,037 - -0.3
3,580,147 + -0.4
3,580,147 + -0.7
3,580,148 - +0.2
3,580,207 + Psest_3409 0.16 +0.3
3,580,261 + Psest_3409 0.26 +0.1
3,580,336 + Psest_3409 0.38 +0.7
3,580,337 - Psest_3409 0.38 +1.2
3,580,337 - Psest_3409 0.38 -0.0
3,580,556 - Psest_3409 0.76 +1.0
3,580,575 + Psest_3409 0.79 +0.1
3,580,575 + Psest_3409 0.79 +0.3
3,580,575 + Psest_3409 0.79 +0.9
3,580,576 - Psest_3409 0.79 -0.2
3,580,576 - Psest_3409 0.79 -1.1
3,580,668 + +0.5
3,580,730 + -0.5
3,580,731 - +0.3
3,580,731 - -0.8
3,580,736 + -0.6
3,580,736 + +0.8
3,580,889 - Psest_3410 0.14 -0.4
3,580,889 - Psest_3410 0.14 -0.4
3,580,924 + Psest_3410 0.16 +0.2
3,580,924 + Psest_3410 0.16 +0.2
3,580,925 - Psest_3410 0.16 +0.9
3,580,925 - Psest_3410 0.16 +1.3
3,580,968 + Psest_3410 0.20 -0.1
3,580,969 - Psest_3410 0.20 +0.1
3,580,969 - Psest_3410 0.20 +0.4
3,580,974 + Psest_3410 0.20 -0.1
3,580,975 - Psest_3410 0.20 -0.2
3,580,975 - Psest_3410 0.20 +0.5
3,580,975 - Psest_3410 0.20 +0.7
3,580,975 - Psest_3410 0.20 -0.2
3,580,989 + Psest_3410 0.21 -0.0

Or see this region's nucleotide sequence