Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3399

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,566,988	-		Psest_3397	0.76	+0.7
3,566,988	-		Psest_3397	0.76	+0.1
3,566,988	-		Psest_3397	0.76	-0.8
3,566,988	-		Psest_3397	0.76	+0.4
3,567,035	+		Psest_3397	0.81	-0.2
3,567,035	+		Psest_3397	0.81	-0.0
3,567,035	+		Psest_3397	0.81	-0.7
3,567,036	-		Psest_3397	0.81	-0.0
3,567,036	-		Psest_3397	0.81	+0.1
3,567,233	+				-0.4
3,567,233	+				-0.1
3,567,233	+				-1.0
3,567,234	-				+0.1
3,567,282	+				-0.1
3,567,467	+		Psest_3398	0.42	+0.5
3,567,467	+		Psest_3398	0.42	+1.5
3,567,468	-		Psest_3398	0.43	+0.2
3,567,468	-		Psest_3398	0.43	-0.0
3,567,524	+		Psest_3398	0.56	-0.9
3,567,524	+		Psest_3398	0.56	-0.2
3,567,525	-		Psest_3398	0.56	+0.3
3,567,559	+		Psest_3398	0.65	+0.9
3,567,703	+				-0.2
3,567,703	+				-1.3
3,567,703	+				-0.1
3,567,704	-				-2.3
3,567,704	-				-0.2
3,567,704	-				+0.5
3,567,776	+				+0.9
3,567,777	-				-2.2
3,567,889	+				-0.8
3,567,889	+				-0.4
3,567,894	+				-0.6
3,567,894	+				+0.5
3,567,894	+				-0.0
3,567,895	-				+0.1
3,568,032	+		Psest_3399	0.39	+0.3
3,568,033	-		Psest_3399	0.39	+0.9
3,568,330	-		Psest_3400	0.17	-1.2
3,568,554	-		Psest_3400	0.69	+0.5
3,568,715	+				-0.0
3,568,770	-				-2.4
3,568,786	+				+0.9
3,568,827	+				-0.6
3,568,827	+				-0.9
3,568,827	+				-0.4
3,568,827	+				-0.6
3,568,827	+				-0.7
3,568,827	+				-0.7
3,568,827	+				-2.2
3,568,827	+				-0.2
3,568,827	+				-0.6
3,568,827	+				-0.7
3,568,827	+				-0.5
3,568,827	+				-1.0
3,568,827	+				+0.7
3,568,827	+				-1.0
3,568,827	+				-0.8
3,568,828	-				-0.3
3,568,828	-				+0.3
3,568,828	-				+2.1
3,568,828	-				-0.1
3,568,828	-				-0.3
3,568,828	-				-0.3
3,568,828	-				+0.7
3,568,828	-				-1.7
3,569,008	+		Psest_3401	0.15	-0.8
3,569,009	-		Psest_3401	0.15	-0.4
3,569,166	+		Psest_3401	0.26	-0.6
3,569,166	+		Psest_3401	0.26	-0.5
3,569,167	-		Psest_3401	0.27	-1.6
3,569,167	-		Psest_3401	0.27	+0.9
3,569,167	-		Psest_3401	0.27	-0.6
3,569,167	-		Psest_3401	0.27	-0.1
3,569,167	-		Psest_3401	0.27	-0.4