Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0325

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0324 and Psest_0325 are separated by 94 nucleotidesPsest_0325 and Psest_0326 overlap by 4 nucleotides Psest_0324: Psest_0324 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 347,136 to 348,125 _0324 Psest_0325: Psest_0325 - Putative threonine efflux protein, at 348,220 to 348,822 _0325 Psest_0326: Psest_0326 - Taurine catabolism dioxygenase TauD, TfdA family., at 348,819 to 349,715 _0326 Position (kb) 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 347.900 kb on - strand, within Psest_0324at 347.900 kb on - strand, within Psest_0324at 348.046 kb on - strandat 348.046 kb on - strandat 348.046 kb on - strandat 348.115 kb on - strandat 348.138 kb on - strandat 348.138 kb on - strandat 348.222 kb on - strandat 348.282 kb on - strand, within Psest_0325at 348.491 kb on - strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.512 kb on + strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.513 kb on - strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.590 kb on + strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.591 kb on - strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.650 kb on + strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.651 kb on - strand, within Psest_0325at 348.658 kb on + strand, within Psest_0325at 348.659 kb on - strand, within Psest_0325at 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.809 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.822 kb on + strandat 348.823 kb on - strandat 348.823 kb on - strandat 348.823 kb on - strandat 348.874 kb on + strandat 348.874 kb on + strandat 349.129 kb on + strand, within Psest_0326at 349.130 kb on - strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.205 kb on - strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.327 kb on + strand, within Psest_0326at 349.328 kb on - strand, within Psest_0326at 349.433 kb on + strand, within Psest_0326at 349.433 kb on + strand, within Psest_0326at 349.434 kb on - strand, within Psest_0326at 349.434 kb on - strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.466 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.674 kb on + strandat 349.699 kb on + strandat 349.699 kb on + strandat 349.702 kb on + strandat 349.702 kb on + strandat 349.702 kb on + strandat 349.703 kb on - strandat 349.703 kb on - strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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347,900 - Psest_0324 0.77 -1.2
347,900 - Psest_0324 0.77 -0.9
348,046 - -0.5
348,046 - -0.3
348,046 - -0.9
348,115 - -0.8
348,138 - +0.2
348,138 - -1.4
348,222 - -0.8
348,282 - Psest_0325 0.10 -0.6
348,491 - Psest_0325 0.45 -0.4
348,512 + Psest_0325 0.48 -1.4
348,512 + Psest_0325 0.48 -1.0
348,512 + Psest_0325 0.48 -1.6
348,512 + Psest_0325 0.48 -0.7
348,512 + Psest_0325 0.48 -0.9
348,512 + Psest_0325 0.48 +0.5
348,512 + Psest_0325 0.48 -1.4
348,512 + Psest_0325 0.48 -1.3
348,512 + Psest_0325 0.48 -1.0
348,512 + Psest_0325 0.48 -0.5
348,513 - Psest_0325 0.49 -1.1
348,513 - Psest_0325 0.49 -0.2
348,513 - Psest_0325 0.49 -0.9
348,513 - Psest_0325 0.49 -1.6
348,513 - Psest_0325 0.49 -0.3
348,513 - Psest_0325 0.49 -0.6
348,513 - Psest_0325 0.49 -0.4
348,513 - Psest_0325 0.49 -1.0
348,513 - Psest_0325 0.49 -1.4
348,513 - Psest_0325 0.49 -0.8
348,590 + Psest_0325 0.61 -1.0
348,590 + Psest_0325 0.61 -1.1
348,590 + Psest_0325 0.61 -1.2
348,590 + Psest_0325 0.61 -0.8
348,591 - Psest_0325 0.62 -0.9
348,591 - Psest_0325 0.62 -2.3
348,591 - Psest_0325 0.62 -1.2
348,591 - Psest_0325 0.62 -1.3
348,591 - Psest_0325 0.62 -1.3
348,650 + Psest_0325 0.71 -2.0
348,650 + Psest_0325 0.71 -2.5
348,650 + Psest_0325 0.71 -1.6
348,650 + Psest_0325 0.71 -0.5
348,650 + Psest_0325 0.71 -1.8
348,650 + Psest_0325 0.71 -1.1
348,650 + Psest_0325 0.71 -0.8
348,650 + Psest_0325 0.71 -0.7
348,650 + Psest_0325 0.71 -0.8
348,650 + Psest_0325 0.71 -1.1
348,650 + Psest_0325 0.71 -0.6
348,651 - Psest_0325 0.71 -0.7
348,651 - Psest_0325 0.71 -0.7
348,651 - Psest_0325 0.71 -1.3
348,651 - Psest_0325 0.71 -2.2
348,651 - Psest_0325 0.71 -1.1
348,651 - Psest_0325 0.71 -1.4
348,651 - Psest_0325 0.71 -1.2
348,658 + Psest_0325 0.73 -0.9
348,659 - Psest_0325 0.73 -0.2
348,809 + -0.9
348,809 + -1.4
348,809 + -1.6
348,809 + -0.9
348,809 + -1.1
348,809 + -0.4
348,809 + -0.5
348,809 + -2.0
348,809 + -1.2
348,809 + -1.0
348,822 + -0.9
348,822 + -0.8
348,822 + +1.2
348,822 + +0.7
348,822 + -0.6
348,822 + +2.1
348,822 + -1.0
348,822 + +0.5
348,822 + -0.2
348,822 + -0.7
348,822 + -0.5
348,822 + -0.9
348,822 + +0.1
348,823 - +0.1
348,823 - -0.5
348,823 - -0.2
348,874 + +1.5
348,874 + -0.0
349,129 + Psest_0326 0.35 -0.0
349,130 - Psest_0326 0.35 +0.9
349,204 + Psest_0326 0.43 +0.5
349,204 + Psest_0326 0.43 -0.0
349,204 + Psest_0326 0.43 +0.9
349,205 - Psest_0326 0.43 +0.3
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 -0.1
349,276 + Psest_0326 0.51 +0.0
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 +0.8
349,276 + Psest_0326 0.51 +0.8
349,276 + Psest_0326 0.51 +0.9
349,276 + Psest_0326 0.51 +0.9
349,276 + Psest_0326 0.51 +0.0
349,276 + Psest_0326 0.51 -0.2
349,276 + Psest_0326 0.51 +0.0
349,276 + Psest_0326 0.51 -1.3
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 -0.1
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 +0.7
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 -0.4
349,276 + Psest_0326 0.51 -0.2
349,276 + Psest_0326 0.51 -0.2
349,276 + Psest_0326 0.51 -0.5
349,276 + Psest_0326 0.51 -0.3
349,276 + Psest_0326 0.51 +1.7
349,276 + Psest_0326 0.51 +0.2
349,276 + Psest_0326 0.51 -0.3
349,277 - Psest_0326 0.51 +0.2
349,277 - Psest_0326 0.51 +0.3
349,277 - Psest_0326 0.51 -0.1
349,277 - Psest_0326 0.51 -0.5
349,277 - Psest_0326 0.51 +0.9
349,277 - Psest_0326 0.51 -0.1
349,277 - Psest_0326 0.51 +0.7
349,277 - Psest_0326 0.51 -1.1
349,277 - Psest_0326 0.51 +0.2
349,277 - Psest_0326 0.51 +1.1
349,277 - Psest_0326 0.51 +0.3
349,277 - Psest_0326 0.51 +0.5
349,277 - Psest_0326 0.51 -0.2
349,277 - Psest_0326 0.51 +0.1
349,277 - Psest_0326 0.51 +0.3
349,277 - Psest_0326 0.51 +1.1
349,327 + Psest_0326 0.57 +0.1
349,328 - Psest_0326 0.57 +0.1
349,433 + Psest_0326 0.68 +0.3
349,433 + Psest_0326 0.68 +2.3
349,434 - Psest_0326 0.69 -0.2
349,434 - Psest_0326 0.69 -2.5
349,465 + Psest_0326 0.72 +0.1
349,465 + Psest_0326 0.72 +1.8
349,465 + Psest_0326 0.72 -0.5
349,466 - Psest_0326 0.72 +1.5
349,541 - Psest_0326 0.80 +0.2
349,541 - Psest_0326 0.80 -0.5
349,541 - Psest_0326 0.80 +0.5
349,674 + +0.2
349,699 + -0.5
349,699 + +0.1
349,702 + -0.4
349,702 + +0.4
349,702 + -0.6
349,703 - +0.1
349,703 - -0.1
349,798 + -0.0
349,798 + -1.9
349,798 + -0.6
349,798 + -0.8
349,798 + -1.0
349,798 + -0.5
349,798 + +0.4
349,798 + +0.4
349,798 + -0.5
349,798 + +0.1
349,798 + +0.7
349,798 + -1.0
349,798 + +0.9
349,799 - -1.7
349,799 - -1.4
349,799 - +0.0
349,799 - -0.0
349,799 - -0.3

Or see this region's nucleotide sequence