Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3250

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,418,580	+		Psest_3248	0.66	-0.4
3,418,580	+		Psest_3248	0.66	-0.8
3,418,580	+		Psest_3248	0.66	+0.2
3,418,580	+		Psest_3248	0.66	-1.5
3,418,581	-		Psest_3248	0.67	-0.3
3,418,581	-		Psest_3248	0.67	-0.3
3,418,581	-		Psest_3248	0.67	-0.8
3,418,610	+		Psest_3248	0.69	-0.6
3,418,622	+		Psest_3248	0.70	+0.2
3,418,629	-		Psest_3248	0.70	+0.3
3,418,629	-		Psest_3248	0.70	+0.9
3,418,629	-		Psest_3248	0.70	-0.1
3,418,629	-		Psest_3248	0.70	-0.3
3,418,629	-		Psest_3248	0.70	+0.0
3,418,629	-		Psest_3248	0.70	-0.4
3,418,704	-		Psest_3248	0.76	+0.8
3,418,745	+		Psest_3248	0.79	+0.9
3,418,745	+		Psest_3248	0.79	-0.6
3,418,745	+		Psest_3248	0.79	-0.4
3,418,745	+		Psest_3248	0.79	-0.1
3,418,745	+		Psest_3248	0.79	+0.1
3,418,746	-		Psest_3248	0.79	+0.0
3,418,746	-		Psest_3248	0.79	-0.2
3,418,746	-		Psest_3248	0.79	-0.1
3,418,746	-		Psest_3248	0.79	-0.6
3,418,746	-		Psest_3248	0.79	-0.6
3,418,746	-		Psest_3248	0.79	-0.5
3,418,746	-		Psest_3248	0.79	+0.4
3,418,833	-		Psest_3248	0.85	+0.0
3,419,037	+				-0.1
3,419,038	-				-0.2
3,419,038	-				-0.3
3,419,108	-				-0.9
3,419,108	-				-0.6
3,419,108	-				-0.3
3,419,114	+				+0.2
3,419,114	+				-0.8
3,419,114	+				+0.2
3,419,115	-				+0.3
3,419,115	-				+0.3
3,419,115	-				-0.1
3,419,115	-				-0.6
3,419,115	-				-0.2
3,419,160	+				-0.2
3,419,160	+				+0.5
3,419,160	+				-0.0
3,419,161	-				+0.0
3,419,161	-				+0.1
3,419,161	-				+0.2
3,419,206	+		Psest_3249	0.19	+1.0
3,419,206	+		Psest_3249	0.19	+1.0
3,419,206	+		Psest_3249	0.19	-0.5
3,419,206	+		Psest_3249	0.19	-0.3
3,419,207	-		Psest_3249	0.19	-0.3
3,419,270	+		Psest_3249	0.37	-0.4
3,419,271	-		Psest_3249	0.38	+0.4
3,419,271	-		Psest_3249	0.38	+0.2
3,419,355	+		Psest_3249	0.62	+0.6
3,419,355	+		Psest_3249	0.62	-0.1
3,419,356	-		Psest_3249	0.63	-0.0
3,419,356	-		Psest_3249	0.63	+0.2
3,419,356	-		Psest_3249	0.63	+0.4
3,419,356	-		Psest_3249	0.63	+1.4
3,419,356	-		Psest_3249	0.63	-0.9
3,419,356	-		Psest_3249	0.63	+0.7
3,419,356	-		Psest_3249	0.63	+0.8
3,419,389	-		Psest_3249	0.72	-0.0
3,419,389	-		Psest_3249	0.72	+0.0
3,419,391	+		Psest_3249	0.73	+0.8
3,419,391	+		Psest_3249	0.73	-0.8
3,419,391	+		Psest_3249	0.73	+0.2
3,419,391	+		Psest_3249	0.73	-0.1
3,419,391	+		Psest_3249	0.73	-0.4
3,419,391	+		Psest_3249	0.73	-0.0
3,419,392	-		Psest_3249	0.73	+0.0
3,419,392	-		Psest_3249	0.73	-0.3
3,419,392	-		Psest_3249	0.73	-0.3
3,419,392	-		Psest_3249	0.73	-0.1
3,419,392	-		Psest_3249	0.73	-1.8
3,419,392	-		Psest_3249	0.73	-0.2
3,419,392	-		Psest_3249	0.73	+0.2
3,419,392	-		Psest_3249	0.73	-0.4
3,419,566	+				+0.2
3,419,566	+				+1.2
3,419,566	+				+0.3
3,419,567	-				+0.9
3,419,612	-		Psest_3250	0.18	+0.5
3,419,829	+		Psest_3250	0.72	-0.1
3,419,830	-		Psest_3250	0.72	+0.8
3,419,830	-		Psest_3250	0.72	+0.4
3,419,830	-		Psest_3250	0.72	-0.6
3,419,839	-		Psest_3250	0.74	+0.7
3,419,861	+		Psest_3250	0.80	+2.4
3,419,862	-		Psest_3250	0.80	-0.1
3,419,862	-		Psest_3250	0.80	+0.2
3,419,910	+				+0.2
3,419,911	-				-0.0
3,419,921	+				+0.6
3,419,922	-				+1.6
3,419,943	+				+1.1
3,419,944	-				+1.1
3,420,167	+				+1.7
3,420,167	+				-1.6
3,420,167	+				+0.3
3,420,167	+				-0.2
3,420,167	+				-0.7
3,420,167	+				+0.6
3,420,168	-				+0.3
3,420,168	-				+0.0
3,420,168	-				-0.8
3,420,168	-				+0.1
3,420,168	-				-0.2
3,420,168	-				+0.9
3,420,168	-				-1.2
3,420,168	-				-0.5
3,420,168	-				+0.6
3,420,171	+				+0.1
3,420,172	-				-1.0
3,420,172	-				+0.4
3,420,172	-				+0.3
3,420,172	-				+0.4
3,420,172	-				+0.6
3,420,172	-				+0.3
3,420,172	-				-0.1
3,420,172	-				+0.1
3,420,172	-				+0.1
3,420,172	-				-0.4
3,420,172	-				-0.8
3,420,172	-				-0.4
3,420,245	+		Psest_3252	0.16	+0.1
3,420,246	-		Psest_3252	0.16	-0.3
3,420,246	-		Psest_3252	0.16	+0.7
3,420,333	-		Psest_3252	0.32	-0.0
3,420,333	-		Psest_3252	0.32	-0.8
3,420,333	-		Psest_3252	0.32	+0.1
3,420,335	+		Psest_3252	0.33	+0.0
3,420,335	+		Psest_3252	0.33	+0.6
3,420,335	+		Psest_3252	0.33	+0.7
3,420,335	+		Psest_3252	0.33	+0.4
3,420,335	+		Psest_3252	0.33	-0.1
3,420,335	+		Psest_3252	0.33	-0.3
3,420,335	+		Psest_3252	0.33	-0.6
3,420,335	+		Psest_3252	0.33	+0.6
3,420,335	+		Psest_3252	0.33	-0.2
3,420,335	+		Psest_3252	0.33	+0.1
3,420,335	+		Psest_3252	0.33	-0.3
3,420,335	+		Psest_3252	0.33	-1.1
3,420,335	+		Psest_3252	0.33	-0.6
3,420,336	-		Psest_3252	0.33	+0.7
3,420,336	-		Psest_3252	0.33	-0.4
3,420,336	-		Psest_3252	0.33	-0.7
3,420,336	-		Psest_3252	0.33	-0.1
3,420,336	-		Psest_3252	0.33	+0.2
3,420,336	-		Psest_3252	0.33	+0.1
3,420,336	-		Psest_3252	0.33	-0.5
3,420,336	-		Psest_3252	0.33	-1.3
3,420,336	-		Psest_3252	0.33	-0.5
3,420,336	-		Psest_3252	0.33	+0.3
3,420,336	-		Psest_3252	0.33	+0.4
3,420,336	-		Psest_3252	0.33	+0.9
3,420,336	-		Psest_3252	0.33	-0.3
3,420,336	-		Psest_3252	0.33	-2.6
3,420,336	-		Psest_3252	0.33	-0.4
3,420,336	-		Psest_3252	0.33	+0.8
3,420,336	-		Psest_3252	0.33	+0.2
3,420,431	-		Psest_3252	0.51	-0.3
3,420,497	+		Psest_3252	0.63	-1.6
3,420,498	-		Psest_3252	0.63	+0.0
3,420,498	-		Psest_3252	0.63	+0.8
3,420,565	+		Psest_3252	0.76	-0.4
3,420,569	+		Psest_3252	0.76	-0.6
3,420,587	+		Psest_3252	0.80	-0.3
3,420,587	+		Psest_3252	0.80	-0.7
3,420,587	+		Psest_3252	0.80	-1.6
3,420,588	-		Psest_3252	0.80	+0.7
3,420,588	-		Psest_3252	0.80	-0.5
3,420,588	-		Psest_3252	0.80	-0.3
3,420,588	-		Psest_3252	0.80	-1.3
3,420,588	-		Psest_3252	0.80	+0.5
3,420,588	-		Psest_3252	0.80	-0.1
3,420,588	-		Psest_3252	0.80	+0.3
3,420,736	-				+0.2
3,420,736	-				-0.4
3,420,736	-				-0.3
3,420,757	-				+0.1
3,420,832	+				+0.0
3,420,833	-				-1.5
3,420,833	-				-3.1
3,420,833	-				-2.4
3,420,833	-				-1.2