Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3080

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,259,681	+		Psest_3079	0.78	+0.5
3,259,681	+		Psest_3079	0.78	-2.9
3,259,681	+		Psest_3079	0.78	-0.3
3,259,681	+		Psest_3079	0.78	+1.1
3,259,681	+		Psest_3079	0.78	+2.1
3,259,682	-		Psest_3079	0.79	+1.7
3,259,682	-		Psest_3079	0.79	-1.0
3,259,682	-		Psest_3079	0.79	-1.9
3,259,735	+		Psest_3079	0.80	+1.3
3,259,735	+		Psest_3079	0.80	-0.3
3,260,119	+				-0.3
3,260,258	-				+1.0
3,260,278	+				+1.2
3,260,278	+				+1.1
3,260,278	+				-0.1
3,260,278	+				+1.1
3,260,279	-				-0.1
3,260,279	-				-0.2
3,260,279	-				+0.1
3,260,279	-				-0.4
3,260,279	-				+0.7
3,260,399	-				+0.4
3,260,459	+				-0.9
3,260,459	+				+0.2
3,260,459	+				+1.5
3,260,494	+				+0.4
3,260,544	+				+0.7
3,260,574	+				+1.4
3,260,574	+				+0.4
3,260,574	+				+0.7
3,260,656	-				+1.1
3,260,781	+		Psest_3080	0.22	+0.7
3,261,028	-		Psest_3080	0.55	+0.1
3,261,052	-		Psest_3080	0.58	+0.5
3,261,511	+				+0.9
3,261,511	+				+1.0
3,261,511	+				-1.0
3,261,511	+				-0.7
3,261,511	+				+0.3
3,261,511	+				+0.8
3,261,511	+				-0.1
3,261,511	+				+0.4
3,261,511	+				-0.6
3,261,511	+				+0.0
3,261,511	+				+0.1
3,261,511	+				-0.9
3,261,512	-				+1.7
3,261,512	-				+0.7
3,261,512	-				-0.8
3,261,512	-				-0.1
3,261,512	-				+0.2
3,261,512	-				+1.1
3,261,512	-				+0.7
3,261,512	-				+0.7
3,261,512	-				+0.1
3,261,512	-				-0.3
3,261,512	-				-1.6
3,261,512	-				+2.3
3,261,512	-				-0.3
3,261,512	-				-1.8
3,261,522	+				-0.7
3,261,523	-				+0.4
3,261,523	-				-0.4
3,261,523	-				+0.1
3,261,603	-				+0.3
3,261,634	+				-1.2
3,261,634	+				-0.5
3,261,635	-				+0.5
3,261,635	-				-0.3
3,261,635	-				+0.3
3,261,635	-				-2.5
3,261,635	-				-0.2
3,261,635	-				+0.1
3,261,635	-				-0.0
3,261,635	-				+0.7
3,261,635	-				+0.3
3,261,787	-		Psest_3081	0.10	+1.4
3,262,048	+		Psest_3081	0.21	+0.4
3,262,048	+		Psest_3081	0.21	+0.4
3,262,049	-		Psest_3081	0.21	+0.2
3,262,069	+		Psest_3081	0.22	-0.1
3,262,069	+		Psest_3081	0.22	-0.4
3,262,070	-		Psest_3081	0.22	+0.3
3,262,070	-		Psest_3081	0.22	-0.5