Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0030

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
29,611	+				-0.4
29,660	-				+1.2
29,660	-				-1.5
30,550	+				+0.1
30,550	+				+3.2
30,551	-				+0.2
30,551	-				-0.8
30,554	+				+0.6
30,625	-		Psest_0030	0.12	-0.4
30,869	+		Psest_0030	0.52	-1.2
30,870	-		Psest_0030	0.52	+0.2
30,974	-		Psest_0030	0.69	-0.4
31,125	-				-1.1
31,125	-				-0.4
31,310	+		Psest_0031	0.43	-1.8
31,311	-		Psest_0031	0.43	-0.2
31,570	+				+1.2
31,570	+				+0.5
31,570	+				+0.2
31,570	+				+1.8
31,571	-				-1.6
31,571	-				+0.9
31,571	-				-0.1
31,663	-				+1.5
31,665	-				+0.6
31,665	-				+0.3
31,680	-				-0.8
31,680	-				+0.6
31,729	-				+0.4
31,747	-				-1.1
31,863	+		Psest_0032	0.14	-0.4
31,864	-		Psest_0032	0.14	+1.1
31,879	+		Psest_0032	0.16	+0.2
31,879	+		Psest_0032	0.16	-0.4
31,879	+		Psest_0032	0.16	-0.9
31,880	-		Psest_0032	0.16	-0.4
31,880	-		Psest_0032	0.16	-0.1
31,880	-		Psest_0032	0.16	+0.6