Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3042

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,224,646	+		Psest_3041	0.61	+0.2
3,224,652	-		Psest_3041	0.62	-0.3
3,224,836	+		Psest_3041	0.69	-0.3
3,224,836	+		Psest_3041	0.69	+0.4
3,224,836	+		Psest_3041	0.69	-0.9
3,224,836	+		Psest_3041	0.69	-1.3
3,224,836	+		Psest_3041	0.69	+0.2
3,224,837	-		Psest_3041	0.69	-0.4
3,224,837	-		Psest_3041	0.69	+0.4
3,224,837	-		Psest_3041	0.69	-0.1
3,224,837	-		Psest_3041	0.69	-0.1
3,224,890	-		Psest_3041	0.71	-1.0
3,224,985	+		Psest_3041	0.75	+0.3
3,224,985	+		Psest_3041	0.75	+0.3
3,224,985	+		Psest_3041	0.75	+0.1
3,225,013	-		Psest_3041	0.76	+1.0
3,225,064	-		Psest_3041	0.78	+0.8
3,225,064	-		Psest_3041	0.78	-0.3
3,225,135	+		Psest_3041	0.81	+0.9
3,225,135	+		Psest_3041	0.81	-0.7
3,225,145	-		Psest_3041	0.81	+0.9
3,225,250	-		Psest_3041	0.86	-0.8
3,225,354	+		Psest_3041	0.90	+0.5
3,225,354	+		Psest_3041	0.90	-0.1
3,225,354	+		Psest_3041	0.90	-0.2
3,225,354	+		Psest_3041	0.90	-0.8
3,225,354	+		Psest_3041	0.90	-1.3
3,225,354	+		Psest_3041	0.90	+0.8
3,225,355	-		Psest_3041	0.90	+0.3
3,225,355	-		Psest_3041	0.90	-1.0
3,225,355	-		Psest_3041	0.90	-2.0
3,225,355	-		Psest_3041	0.90	-0.9
3,225,355	-		Psest_3041	0.90	+0.9
3,225,355	-		Psest_3041	0.90	-0.5
3,225,568	-				-1.7
3,225,638	+				-0.4
3,225,946	+		Psest_3042	0.66	+0.5
3,225,994	+		Psest_3042	0.75	+0.2
3,226,319	+		Psest_3043	0.33	-1.1
3,226,319	+		Psest_3043	0.33	-1.1
3,226,319	+		Psest_3043	0.33	-0.2
3,226,319	+		Psest_3043	0.33	-1.1
3,226,319	+		Psest_3043	0.33	+0.2
3,226,319	+		Psest_3043	0.33	-0.8
3,226,319	+		Psest_3043	0.33	-1.2
3,226,319	+		Psest_3043	0.33	-0.4
3,226,319	+		Psest_3043	0.33	-0.3
3,226,320	-		Psest_3043	0.33	-0.1
3,226,320	-		Psest_3043	0.33	-0.2
3,226,320	-		Psest_3043	0.33	+0.4
3,226,320	-		Psest_3043	0.33	+0.2
3,226,320	-		Psest_3043	0.33	-0.1
3,226,346	+		Psest_3043	0.37	+0.1
3,226,346	+		Psest_3043	0.37	-0.7
3,226,347	-		Psest_3043	0.37	-0.3
3,226,392	+		Psest_3043	0.45	+0.0
3,226,392	+		Psest_3043	0.45	-0.8
3,226,729	+				-0.1
3,226,729	+				-0.4
3,226,730	-				-0.2
3,226,730	-				-0.6
3,226,730	-				+0.8
3,226,860	+				+0.0
3,226,861	-				-0.8
3,226,861	-				-0.9
3,226,881	+		Psest_3044	0.10	-0.3
3,226,944	+		Psest_3044	0.21	-0.3
3,226,944	+		Psest_3044	0.21	-0.4
3,226,944	+		Psest_3044	0.21	-1.3
3,226,944	+		Psest_3044	0.21	-0.6
3,226,945	-		Psest_3044	0.22	-0.5
3,226,945	-		Psest_3044	0.22	-0.9
3,226,945	-		Psest_3044	0.22	+0.9
3,226,945	-		Psest_3044	0.22	-0.3
3,226,945	-		Psest_3044	0.22	-2.1
3,226,945	-		Psest_3044	0.22	-1.0
3,226,945	-		Psest_3044	0.22	-0.3
3,227,049	+		Psest_3044	0.40	+0.4
3,227,050	-		Psest_3044	0.40	-0.3
3,227,050	-		Psest_3044	0.40	-0.4
3,227,050	-		Psest_3044	0.40	-0.7
3,227,100	+		Psest_3044	0.49	-1.0
3,227,100	+		Psest_3044	0.49	-0.8
3,227,101	-		Psest_3044	0.49	+0.2