Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2960

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,155,261	+		Psest_2959	0.51	-0.3
3,155,261	+		Psest_2959	0.51	+0.3
3,155,261	+		Psest_2959	0.51	+0.0
3,155,262	-		Psest_2959	0.51	+0.4
3,155,262	-		Psest_2959	0.51	-0.3
3,155,262	-		Psest_2959	0.51	-1.3
3,155,569	-		Psest_2959	0.67	-1.3
3,155,596	+		Psest_2959	0.68	-0.8
3,155,596	+		Psest_2959	0.68	+0.0
3,155,596	+		Psest_2959	0.68	-0.2
3,155,596	+		Psest_2959	0.68	-0.2
3,155,597	-		Psest_2959	0.68	-0.3
3,155,597	-		Psest_2959	0.68	+0.2
3,155,597	-		Psest_2959	0.68	-0.0
3,155,597	-		Psest_2959	0.68	+0.2
3,155,612	+		Psest_2959	0.69	+1.0
3,155,670	+		Psest_2959	0.72	-0.7
3,155,734	+		Psest_2959	0.75	-0.4
3,155,798	+		Psest_2959	0.78	+0.4
3,155,799	-		Psest_2959	0.78	+2.3
3,155,934	+		Psest_2959	0.85	-0.7
3,155,934	+		Psest_2959	0.85	-0.8
3,155,935	-		Psest_2959	0.85	-0.3
3,155,978	+		Psest_2959	0.87	-1.1
3,155,978	+		Psest_2959	0.87	+0.2
3,155,979	-		Psest_2959	0.87	+0.1
3,155,979	-		Psest_2959	0.87	+0.7
3,155,979	-		Psest_2959	0.87	-0.5
3,156,006	+		Psest_2959	0.88	+0.3
3,156,006	+		Psest_2959	0.88	+0.3
3,156,006	+		Psest_2959	0.88	+0.4
3,156,006	+		Psest_2959	0.88	-0.3
3,156,006	+		Psest_2959	0.88	+0.5
3,156,007	-		Psest_2959	0.88	-0.4
3,156,007	-		Psest_2959	0.88	-0.8
3,156,007	-		Psest_2959	0.88	-1.3
3,156,007	-		Psest_2959	0.88	-0.8
3,156,007	-		Psest_2959	0.88	+0.3
3,156,009	+		Psest_2959	0.88	+0.2
3,156,009	+		Psest_2959	0.88	-0.8
3,156,009	+		Psest_2959	0.88	+0.6
3,156,009	+		Psest_2959	0.88	-1.0
3,156,009	+		Psest_2959	0.88	+0.2
3,156,009	+		Psest_2959	0.88	-3.1
3,156,009	+		Psest_2959	0.88	+0.4
3,156,010	-		Psest_2959	0.89	-1.0
3,156,010	-		Psest_2959	0.89	-0.1
3,156,010	-		Psest_2959	0.89	-0.1
3,156,010	-		Psest_2959	0.89	+0.3
3,156,010	-		Psest_2959	0.89	+0.5
3,156,010	-		Psest_2959	0.89	-0.8
3,156,010	-		Psest_2959	0.89	+0.7
3,156,010	-		Psest_2959	0.89	+0.1
3,156,010	-		Psest_2959	0.89	+1.8
3,156,010	-		Psest_2959	0.89	+0.1
3,156,010	-		Psest_2959	0.89	-0.9
3,156,010	-		Psest_2959	0.89	+0.1
3,156,013	-		Psest_2959	0.89	+0.4
3,156,013	-		Psest_2959	0.89	-0.1
3,156,013	-		Psest_2959	0.89	+0.1
3,156,041	+				+0.2
3,156,041	+				+0.1
3,156,041	+				-0.0
3,156,083	+				-0.1
3,156,083	+				-0.3
3,156,083	+				-0.0
3,156,151	-				-0.9
3,156,229	+				+0.4
3,156,230	-				+1.0
3,156,296	+				+0.0
3,156,296	+				+0.3
3,156,296	+				-0.1
3,156,296	+				-1.7
3,156,296	+				-0.4
3,156,297	-				-2.5
3,156,297	-				-0.1
3,156,297	-				+0.2
3,156,297	-				-0.3
3,156,370	+		Psest_2960	0.11	-0.1
3,156,492	-		Psest_2960	0.21	+1.1
3,156,537	-		Psest_2960	0.25	+1.0
3,156,914	-		Psest_2960	0.57	-0.9
3,157,172	+		Psest_2960	0.79	+0.6
3,157,172	+		Psest_2960	0.79	+0.3
3,157,172	+		Psest_2960	0.79	+0.2
3,157,172	+		Psest_2960	0.79	+0.6
3,157,172	+		Psest_2960	0.79	+0.2
3,157,172	+		Psest_2960	0.79	-0.3
3,157,172	+		Psest_2960	0.79	+1.2
3,157,172	+		Psest_2960	0.79	-0.7
3,157,172	+		Psest_2960	0.79	-0.1
3,157,172	+		Psest_2960	0.79	+1.2
3,157,172	+		Psest_2960	0.79	+0.2
3,157,173	-		Psest_2960	0.79	+0.2
3,157,173	-		Psest_2960	0.79	+0.5
3,157,173	-		Psest_2960	0.79	+0.3
3,157,173	-		Psest_2960	0.79	-1.1
3,157,173	-		Psest_2960	0.79	+0.2
3,157,173	-		Psest_2960	0.79	+0.3
3,157,173	-		Psest_2960	0.79	+1.0
3,157,173	-		Psest_2960	0.79	+0.3
3,157,173	-		Psest_2960	0.79	+0.1
3,157,184	+		Psest_2960	0.80	+1.0
3,157,184	+		Psest_2960	0.80	+0.6
3,157,204	-		Psest_2960	0.82	+0.8
3,157,367	+				-1.2
3,157,367	+				+0.5
3,157,367	+				+1.0
3,157,368	-				-0.1
3,157,428	+				+0.7
3,157,429	-				+0.4
3,157,429	-				+0.7
3,157,429	-				+0.1
3,157,429	-				-0.0
3,157,818	+		Psest_2961	0.36	+0.3
3,157,819	-		Psest_2961	0.36	-0.3
3,157,819	-		Psest_2961	0.36	+0.3
3,157,972	+		Psest_2961	0.50	+0.4
3,157,973	-		Psest_2961	0.50	+0.0
3,158,124	+		Psest_2961	0.63	+1.2
3,158,290	+		Psest_2961	0.78	+0.3