Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2407

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,561,950	+		Psest_2406	0.67	-0.7
2,561,950	+		Psest_2406	0.67	+0.4
2,561,951	-		Psest_2406	0.67	+0.2
2,561,951	-		Psest_2406	0.67	-1.0
2,562,028	+		Psest_2406	0.70	-2.7
2,562,029	-		Psest_2406	0.70	+1.9
2,562,037	+		Psest_2406	0.70	-1.7
2,562,250	+		Psest_2406	0.78	+1.4
2,562,251	-		Psest_2406	0.78	-0.8
2,562,251	-		Psest_2406	0.78	-0.4
2,562,475	+		Psest_2406	0.87	+0.3
2,562,475	+		Psest_2406	0.87	-1.6
2,562,475	+		Psest_2406	0.87	-0.5
2,562,475	+		Psest_2406	0.87	-0.2
2,562,475	+		Psest_2406	0.87	+0.6
2,562,475	+		Psest_2406	0.87	+0.6
2,562,475	+		Psest_2406	0.87	-2.0
2,562,476	-		Psest_2406	0.87	+1.2
2,562,476	-		Psest_2406	0.87	-0.4
2,562,476	-		Psest_2406	0.87	-1.2
2,562,476	-		Psest_2406	0.87	-1.7
2,562,476	-		Psest_2406	0.87	+0.6
2,562,504	+		Psest_2406	0.88	+0.7
2,562,544	+		Psest_2406	0.90	+1.1
2,562,545	-		Psest_2406	0.90	+0.4
2,562,625	+				-0.1
2,562,625	+				-0.5
2,562,625	+				-0.2
2,562,625	+				+0.6
2,562,626	-				-0.0
2,562,626	-				+0.0
2,562,626	-				-0.4
2,562,626	-				-2.2
2,562,626	-				-0.6
2,563,071	+		Psest_2407	0.70	+0.6
2,563,071	+		Psest_2407	0.70	-0.0
2,563,071	+		Psest_2407	0.70	+0.6
2,563,071	+		Psest_2407	0.70	-1.1
2,563,071	+		Psest_2407	0.70	-0.4
2,563,072	-		Psest_2407	0.71	-0.6
2,563,072	-		Psest_2407	0.71	+1.6
2,563,072	-		Psest_2407	0.71	-0.4
2,563,114	-		Psest_2407	0.82	+1.4
2,563,358	+				-0.2
2,563,358	+				+0.1
2,563,358	+				-0.1
2,563,358	+				-0.1
2,563,359	-				-0.3
2,563,359	-				-0.7
2,563,359	-				-0.6
2,563,359	-				-1.4
2,563,359	-				+0.3
2,563,562	+		Psest_2408	0.26	-0.4
2,563,594	-		Psest_2408	0.30	-0.7
2,564,045	+		Psest_2408	0.85	-0.5
2,564,045	+		Psest_2408	0.85	-0.2
2,564,045	+		Psest_2408	0.85	+0.1
2,564,045	+		Psest_2408	0.85	-0.3
2,564,045	+		Psest_2408	0.85	-0.2
2,564,045	+		Psest_2408	0.85	-1.9
2,564,045	+		Psest_2408	0.85	+0.6
2,564,045	+		Psest_2408	0.85	-1.0
2,564,045	+		Psest_2408	0.85	+2.6
2,564,045	+		Psest_2408	0.85	-0.9
2,564,045	+		Psest_2408	0.85	-1.0
2,564,045	+		Psest_2408	0.85	+0.4
2,564,046	-		Psest_2408	0.85	+1.0
2,564,046	-		Psest_2408	0.85	-0.9
2,564,046	-		Psest_2408	0.85	-0.6
2,564,046	-		Psest_2408	0.85	+0.3
2,564,046	-		Psest_2408	0.85	+0.6
2,564,046	-		Psest_2408	0.85	+0.2
2,564,046	-		Psest_2408	0.85	-2.2
2,564,046	-		Psest_2408	0.85	-1.4
2,564,046	-		Psest_2408	0.85	-0.5
2,564,120	+				+1.2
2,564,121	-				-0.4
2,564,160	-				-1.2
2,564,160	-				-1.0
2,564,160	-				+0.2
2,564,160	-				+1.1