Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2038

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,158,830	-		Psest_2037	0.36	-3.6
2,159,343	+		Psest_2037	0.73	+0.7
2,159,344	-		Psest_2037	0.73	-0.7
2,159,472	+		Psest_2037	0.82	-0.0
2,159,472	+		Psest_2037	0.82	+0.1
2,159,472	+		Psest_2037	0.82	-0.2
2,159,472	+		Psest_2037	0.82	-1.1
2,159,472	+		Psest_2037	0.82	+0.2
2,159,473	-		Psest_2037	0.82	+0.6
2,159,473	-		Psest_2037	0.82	-0.3
2,159,473	-		Psest_2037	0.82	-0.2
2,159,473	-		Psest_2037	0.82	-0.5
2,159,721	+				+0.4
2,159,721	+				-0.1
2,159,721	+				-0.8
2,160,044	+		Psest_2038	0.44	+1.5
2,160,128	+		Psest_2038	0.56	+0.0
2,160,128	+		Psest_2038	0.56	+0.4
2,160,129	-		Psest_2038	0.57	+1.6
2,160,132	+		Psest_2038	0.57	+0.3
2,160,132	+		Psest_2038	0.57	+0.6
2,160,145	+		Psest_2038	0.59	+0.2
2,160,145	+		Psest_2038	0.59	+0.1
2,160,145	+		Psest_2038	0.59	-0.9
2,160,145	+		Psest_2038	0.59	+0.0
2,160,146	-		Psest_2038	0.59	+0.4
2,160,146	-		Psest_2038	0.59	+0.6
2,160,328	+		Psest_2038	0.86	+0.5
2,160,329	-		Psest_2038	0.87	+0.7
2,160,413	+				-0.0
2,160,413	+				+1.2
2,160,413	+				-1.0
2,160,413	+				+0.6
2,160,413	+				+0.2
2,160,414	-				+0.8
2,160,414	-				+0.5
2,160,558	+		Psest_2039	0.16	+0.9
2,160,559	-		Psest_2039	0.16	+0.2
2,160,568	+		Psest_2039	0.17	+1.1
2,160,569	-		Psest_2039	0.18	+0.4
2,160,570	+		Psest_2039	0.18	+0.3
2,160,630	+		Psest_2039	0.28	+0.5
2,160,690	+		Psest_2039	0.39	+0.3
2,160,691	-		Psest_2039	0.39	+0.2
2,160,855	-		Psest_2039	0.68	-0.3
2,161,038	-				+0.7
2,161,039	+				+1.3
2,161,039	+				-0.3
2,161,039	+				+0.2
2,161,039	+				-0.4
2,161,039	+				-0.1
2,161,039	+				+0.1
2,161,039	+				+0.5
2,161,039	+				+0.1
2,161,039	+				-0.3
2,161,039	+				+1.5
2,161,039	+				+0.5
2,161,039	+				+0.5
2,161,040	-				-0.1
2,161,040	-				+0.0
2,161,040	-				-0.2
2,161,040	-				-0.3
2,161,040	-				+0.5
2,161,040	-				-0.6
2,161,040	-				+0.7
2,161,040	-				-0.6
2,161,040	-				+0.5
2,161,040	-				+0.6
2,161,066	+				-0.2
2,161,089	+				-0.0
2,161,089	+				-0.2
2,161,089	+				-1.0
2,161,090	-				+0.5
2,161,090	-				+0.3
2,161,128	+				+0.0
2,161,137	+				-1.4
2,161,138	-				-0.5
2,161,207	+				+0.2
2,161,207	+				+0.3
2,161,208	-				-0.3
2,161,251	+		Psest_2040	0.15	-0.6
2,161,251	+		Psest_2040	0.15	+0.3
2,161,351	-		Psest_2040	0.27	+0.3