Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1935

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,046,315	+		Psest_1933	0.58	-1.5
2,046,465	+		Psest_1933	0.74	-0.4
2,046,465	+		Psest_1933	0.74	-0.8
2,046,465	+		Psest_1933	0.74	+0.1
2,046,466	-		Psest_1933	0.74	-1.4
2,046,466	-		Psest_1933	0.74	+0.8
2,046,466	-		Psest_1933	0.74	+0.0
2,046,466	-		Psest_1933	0.74	+1.5
2,046,466	-		Psest_1933	0.74	-0.6
2,046,466	-		Psest_1933	0.74	-0.2
2,046,466	-		Psest_1933	0.74	-1.6
2,046,472	-		Psest_1933	0.75	-0.2
2,046,652	+				+0.2
2,046,652	+				+1.0
2,046,652	+				-0.2
2,046,705	+				-0.6
2,046,706	-				-0.3
2,046,778	-		Psest_1934	0.17	-0.4
2,046,784	-		Psest_1934	0.18	+0.5
2,046,784	-		Psest_1934	0.18	-1.8
2,046,864	+		Psest_1934	0.36	-0.5
2,046,865	-		Psest_1934	0.36	-0.4
2,046,929	-		Psest_1934	0.51	+0.0
2,046,929	-		Psest_1934	0.51	+0.4
2,046,929	-		Psest_1934	0.51	+0.5
2,046,930	+		Psest_1934	0.51	+0.2
2,046,930	+		Psest_1934	0.51	+0.9
2,046,930	+		Psest_1934	0.51	-0.2
2,046,930	+		Psest_1934	0.51	-1.2
2,046,930	+		Psest_1934	0.51	-2.7
2,046,930	+		Psest_1934	0.51	-0.1
2,046,931	-		Psest_1934	0.51	-0.2
2,046,931	-		Psest_1934	0.51	-0.1
2,046,931	-		Psest_1934	0.51	+0.5
2,046,931	-		Psest_1934	0.51	-1.1
2,047,001	+		Psest_1934	0.67	-0.0
2,047,001	+		Psest_1934	0.67	-0.4
2,047,001	+		Psest_1934	0.67	+0.0
2,047,001	+		Psest_1934	0.67	-2.1
2,047,002	-		Psest_1934	0.67	-0.1
2,047,002	-		Psest_1934	0.67	-0.1
2,047,030	+		Psest_1934	0.73	-0.7
2,047,030	+		Psest_1934	0.73	-0.5
2,047,182	+				-0.9
2,047,183	-				-1.0
2,047,183	-				-0.2
2,047,588	-		Psest_1935	0.38	+0.6
2,047,679	+		Psest_1935	0.51	-1.4
2,047,679	+		Psest_1935	0.51	-0.8
2,047,680	-		Psest_1935	0.51	-2.1
2,047,680	-		Psest_1935	0.51	-1.2
2,047,680	-		Psest_1935	0.51	-0.1
2,047,680	-		Psest_1935	0.51	-0.7
2,047,683	+		Psest_1935	0.52	+0.2
2,047,683	+		Psest_1935	0.52	+1.5
2,047,683	+		Psest_1935	0.52	-0.5
2,047,683	+		Psest_1935	0.52	-0.1
2,047,683	+		Psest_1935	0.52	+0.5
2,047,683	+		Psest_1935	0.52	-0.2
2,047,683	+		Psest_1935	0.52	+0.7
2,047,684	-		Psest_1935	0.52	-0.8
2,047,684	-		Psest_1935	0.52	-1.8
2,047,684	-		Psest_1935	0.52	-0.7
2,047,684	-		Psest_1935	0.52	-1.3
2,047,684	-		Psest_1935	0.52	-0.4
2,047,684	-		Psest_1935	0.52	-2.2
2,047,684	-		Psest_1935	0.52	+0.5
2,047,684	-		Psest_1935	0.52	-1.5
2,047,684	-		Psest_1935	0.52	-0.2
2,047,684	-		Psest_1935	0.52	-1.3
2,047,684	-		Psest_1935	0.52	-2.2
2,047,684	-		Psest_1935	0.52	-2.1
2,047,684	-		Psest_1935	0.52	-1.4
2,047,684	-		Psest_1935	0.52	-0.2
2,047,766	-		Psest_1935	0.63	-0.7
2,048,169	+				+0.5
2,048,169	+				-0.6
2,048,169	+				-0.1
2,048,170	-				+0.3
2,048,426	+		Psest_1936	0.16	-0.1
2,048,427	-		Psest_1936	0.16	-1.6
2,048,427	-		Psest_1936	0.16	-0.8
2,048,428	+		Psest_1936	0.16	-1.2
2,048,428	+		Psest_1936	0.16	-1.0
2,048,429	-		Psest_1936	0.16	+0.1
2,048,603	+		Psest_1936	0.46	-1.0
2,048,617	+		Psest_1936	0.49	-0.1
2,048,617	+		Psest_1936	0.49	-0.5
2,048,617	+		Psest_1936	0.49	-0.5
2,048,617	+		Psest_1936	0.49	+0.5
2,048,618	-		Psest_1936	0.49	-0.3
2,048,618	-		Psest_1936	0.49	+0.3
2,048,618	-		Psest_1936	0.49	+0.5
2,048,618	-		Psest_1936	0.49	-0.5
2,048,618	-		Psest_1936	0.49	+0.5
2,048,709	+		Psest_1936	0.65	-0.8
2,048,710	-		Psest_1936	0.65	-0.3
2,048,710	-		Psest_1936	0.65	-0.8
2,048,715	+		Psest_1936	0.66	-1.5
2,048,715	+		Psest_1936	0.66	+1.2
2,048,731	-		Psest_1936	0.69	-3.1
2,048,731	-		Psest_1936	0.69	-1.4
2,048,805	+		Psest_1936	0.81	-0.7
2,048,805	+		Psest_1936	0.81	-1.8
2,048,805	+		Psest_1936	0.81	-0.4
2,048,805	+		Psest_1936	0.81	-0.8
2,048,806	-		Psest_1936	0.82	+0.2
2,048,806	-		Psest_1936	0.82	+0.3
2,048,913	-				-0.9
2,048,986	-				-1.0