Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1888

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,996,108	+				-2.1
1,996,175	+				+1.2
1,996,178	+				-0.1
1,996,178	+				+0.6
1,996,178	+				+0.1
1,996,178	+				-1.2
1,996,178	+				+0.7
1,996,245	+				+1.3
1,996,381	-		Psest_1887	0.23	+0.7
1,996,404	+		Psest_1887	0.26	+1.6
1,996,404	+		Psest_1887	0.26	+0.2
1,996,404	+		Psest_1887	0.26	+0.3
1,996,404	+		Psest_1887	0.26	-0.3
1,996,404	+		Psest_1887	0.26	+0.0
1,996,404	+		Psest_1887	0.26	-1.1
1,996,404	+		Psest_1887	0.26	-0.2
1,996,405	-		Psest_1887	0.26	+0.5
1,996,405	-		Psest_1887	0.26	+0.3
1,996,405	-		Psest_1887	0.26	-0.9
1,996,405	-		Psest_1887	0.26	+0.1
1,996,405	-		Psest_1887	0.26	+0.4
1,996,405	-		Psest_1887	0.26	+0.2
1,996,897	-		Psest_1887	0.83	+0.6
1,997,564	-		Psest_1888	0.81	+0.8
1,997,642	-				-0.0
1,997,642	-				+0.6
1,997,711	+				-2.9
1,997,712	-				+0.9
1,997,712	-				+0.4
1,997,712	-				-1.5
1,997,718	+				+0.2
1,997,718	+				-0.8
1,997,719	-				-0.4
1,997,719	-				+0.9
1,997,803	+				+0.6
1,997,803	+				+0.4
1,997,932	-		Psest_1889	0.17	+0.5
1,997,981	+		Psest_1889	0.21	-0.7
1,998,074	-		Psest_1889	0.28	-0.2
1,998,074	-		Psest_1889	0.28	+0.7
1,998,074	-		Psest_1889	0.28	+0.0
1,998,115	-		Psest_1889	0.32	-0.1
1,998,119	-		Psest_1889	0.32	+0.1
1,998,119	-		Psest_1889	0.32	+0.4
1,998,166	+		Psest_1889	0.36	+0.6
1,998,167	-		Psest_1889	0.36	+0.1
1,998,253	+		Psest_1889	0.43	-0.1
1,998,254	-		Psest_1889	0.43	+0.4
1,998,329	-		Psest_1889	0.49	+0.4
1,998,329	-		Psest_1889	0.49	-0.3
1,998,350	-		Psest_1889	0.51	+0.2
1,998,443	-		Psest_1889	0.59	-0.1
1,998,565	+		Psest_1889	0.69	+0.0
1,998,565	+		Psest_1889	0.69	-0.3
1,998,566	-		Psest_1889	0.69	+1.7
1,998,566	-		Psest_1889	0.69	-1.1
1,998,566	-		Psest_1889	0.69	+1.0
1,998,566	-		Psest_1889	0.69	+0.9
1,998,632	+		Psest_1889	0.74	+0.2
1,998,632	+		Psest_1889	0.74	+1.7
1,998,632	+		Psest_1889	0.74	-0.2
1,998,633	-		Psest_1889	0.74	+0.1
1,998,633	-		Psest_1889	0.74	+0.5