Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1824

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,922,080	+				+0.3
1,922,080	+				+0.7
1,922,080	+				-0.1
1,922,080	+				+0.2
1,922,093	+				-0.3
1,922,093	+				+0.7
1,922,094	-				-0.6
1,922,094	-				+0.8
1,922,094	-				+0.7
1,922,099	+				+0.4
1,922,099	+				+0.4
1,922,100	-				-0.0
1,922,134	+				-0.4
1,922,158	+				-0.1
1,922,158	+				+0.1
1,922,158	+				+0.3
1,922,158	+				-0.2
1,922,158	+				+1.5
1,922,159	-				+0.4
1,922,256	-		Psest_1823	0.17	+0.1
1,922,290	+		Psest_1823	0.20	-2.1
1,922,290	+		Psest_1823	0.20	+0.2
1,922,318	+		Psest_1823	0.23	+0.2
1,922,319	-		Psest_1823	0.23	+0.2
1,922,385	-		Psest_1823	0.30	-0.2
1,922,426	+		Psest_1823	0.35	+0.2
1,922,426	+		Psest_1823	0.35	+0.2
1,922,426	+		Psest_1823	0.35	+0.2
1,922,427	-		Psest_1823	0.35	+0.5
1,922,427	-		Psest_1823	0.35	-0.5
1,922,427	-		Psest_1823	0.35	-0.2
1,922,430	+		Psest_1823	0.35	-1.0
1,922,430	+		Psest_1823	0.35	+0.3
1,922,430	+		Psest_1823	0.35	+0.0
1,922,430	+		Psest_1823	0.35	+1.3
1,922,430	+		Psest_1823	0.35	+1.1
1,922,430	+		Psest_1823	0.35	+0.9
1,922,430	+		Psest_1823	0.35	+0.3
1,922,430	+		Psest_1823	0.35	+0.0
1,922,430	+		Psest_1823	0.35	+0.9
1,922,431	-		Psest_1823	0.35	-0.2
1,922,431	-		Psest_1823	0.35	+0.3
1,922,431	-		Psest_1823	0.35	+0.4
1,922,431	-		Psest_1823	0.35	+0.3
1,922,431	-		Psest_1823	0.35	-0.0
1,922,431	-		Psest_1823	0.35	-0.8
1,922,431	-		Psest_1823	0.35	-0.3
1,922,431	-		Psest_1823	0.35	+0.0
1,922,431	-		Psest_1823	0.35	+0.6
1,922,431	-		Psest_1823	0.35	+0.5
1,922,432	+		Psest_1823	0.35	+0.3
1,922,433	-		Psest_1823	0.35	+0.2
1,922,433	-		Psest_1823	0.35	-0.1
1,922,623	+		Psest_1823	0.56	-2.0
1,922,666	+		Psest_1823	0.60	+2.0
1,922,666	+		Psest_1823	0.60	-1.1
1,922,735	+		Psest_1823	0.67	+1.0
1,922,735	+		Psest_1823	0.67	-0.9
1,922,736	-		Psest_1823	0.68	+0.2
1,922,736	-		Psest_1823	0.68	-1.6
1,922,736	-		Psest_1823	0.68	+0.5
1,922,776	+		Psest_1823	0.72	+1.0
1,922,807	+		Psest_1823	0.75	+0.9
1,922,808	-		Psest_1823	0.75	+0.2
1,922,818	+		Psest_1823	0.76	+0.5
1,922,818	+		Psest_1823	0.76	-0.6
1,922,819	-		Psest_1823	0.76	-0.0
1,922,821	+		Psest_1823	0.77	+0.6
1,922,821	+		Psest_1823	0.77	+0.3
1,922,846	+		Psest_1823	0.79	+0.3
1,922,897	+		Psest_1823	0.85	-0.1
1,922,897	+		Psest_1823	0.85	+0.3
1,922,897	+		Psest_1823	0.85	+0.8
1,922,898	-		Psest_1823	0.85	+0.5
1,922,898	-		Psest_1823	0.85	+1.1
1,922,898	-		Psest_1823	0.85	+0.1
1,923,054	-				+0.9
1,923,070	-				+0.0
1,923,128	+		Psest_1824	0.12	-0.6
1,923,216	+		Psest_1824	0.28	+0.3
1,923,217	-		Psest_1824	0.28	-1.6
1,923,528	+		Psest_1824	0.85	+0.2
1,923,528	+		Psest_1824	0.85	+0.4
1,923,550	+		Psest_1824	0.89	+1.0
1,923,550	+		Psest_1824	0.89	+0.3
1,923,550	+		Psest_1824	0.89	+0.9
1,923,551	-		Psest_1824	0.89	+0.3
1,923,559	+				-0.9
1,923,560	-				+0.5
1,923,560	-				-0.5
1,923,567	+				+0.9
1,923,567	+				-0.3
1,923,639	+				-1.2
1,923,640	-				+0.1
1,923,662	+				+0.2
1,923,663	-				+0.6
1,923,699	+				+0.9
1,923,732	+				-0.3
1,923,733	-				+1.1
1,923,818	+				+1.0
1,923,818	+				-1.5
1,923,904	+				-0.4
1,923,993	-		Psest_1825	0.12	+0.4
1,924,085	+		Psest_1825	0.16	-0.6
1,924,156	-		Psest_1825	0.20	+0.1
1,924,190	+		Psest_1825	0.21	-0.3
1,924,190	+		Psest_1825	0.21	+0.2
1,924,191	-		Psest_1825	0.21	-0.0
1,924,191	-		Psest_1825	0.21	+1.0
1,924,225	+		Psest_1825	0.23	+0.3
1,924,225	+		Psest_1825	0.23	-0.1
1,924,225	+		Psest_1825	0.23	+0.2
1,924,225	+		Psest_1825	0.23	+0.1
1,924,225	+		Psest_1825	0.23	+1.0
1,924,226	-		Psest_1825	0.23	+0.1
1,924,269	+		Psest_1825	0.25	+0.7
1,924,269	+		Psest_1825	0.25	+0.1
1,924,269	+		Psest_1825	0.25	-0.0
1,924,269	+		Psest_1825	0.25	-0.2
1,924,269	+		Psest_1825	0.25	+0.1
1,924,270	-		Psest_1825	0.25	-1.0
1,924,270	-		Psest_1825	0.25	-0.0
1,924,271	+		Psest_1825	0.25	-0.4
1,924,397	+		Psest_1825	0.32	+0.8
1,924,527	+		Psest_1825	0.38	+0.8
1,924,527	+		Psest_1825	0.38	-1.2
1,924,528	-		Psest_1825	0.38	-0.6
1,924,528	-		Psest_1825	0.38	-0.6
1,924,528	-		Psest_1825	0.38	-0.2