Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1809

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,907,492	-		Psest_1808	0.46	+0.4
1,907,536	-		Psest_1808	0.49	-0.0
1,907,576	+		Psest_1808	0.52	+0.2
1,907,623	+		Psest_1808	0.55	-1.6
1,907,623	+		Psest_1808	0.55	+0.0
1,907,624	-		Psest_1808	0.55	-0.3
1,907,624	-		Psest_1808	0.55	+0.4
1,907,624	-		Psest_1808	0.55	+0.1
1,907,679	-		Psest_1808	0.58	+0.1
1,907,985	+		Psest_1808	0.78	+0.1
1,907,986	-		Psest_1808	0.78	+0.4
1,907,986	-		Psest_1808	0.78	+0.4
1,908,025	+		Psest_1808	0.81	+0.2
1,908,025	+		Psest_1808	0.81	+0.9
1,908,026	-		Psest_1808	0.81	+0.2
1,908,026	-		Psest_1808	0.81	-0.0
1,908,026	-		Psest_1808	0.81	+0.2
1,908,093	+		Psest_1808	0.85	-0.3
1,908,093	+		Psest_1808	0.85	-0.0
1,908,094	-		Psest_1808	0.85	+0.7
1,908,094	-		Psest_1808	0.85	+0.4
1,908,094	-		Psest_1808	0.85	-0.7
1,908,223	+				+0.3
1,908,223	+				+0.1
1,908,223	+				+0.2
1,908,223	+				-0.5
1,908,224	-				-0.4
1,908,224	-				-0.7
1,908,224	-				+0.6
1,908,274	+				-0.7
1,908,274	+				+0.2
1,908,285	+				+0.2
1,908,285	+				+0.4
1,908,285	+				+0.3
1,908,289	-				+1.2
1,908,300	-				+0.4
1,908,345	+				+0.7
1,908,345	+				-0.5
1,908,346	-				+0.8
1,908,346	-				+1.0
1,908,368	+				+0.0
1,908,369	-				+0.7
1,908,369	-				+0.4
1,908,369	-				+1.1
1,908,408	+				-0.4
1,908,409	-				+0.6
1,908,409	-				+0.5
1,908,409	-				+1.4
1,908,423	+				-0.3
1,908,423	+				+0.2
1,908,424	-				+0.1
1,908,424	-				+1.2
1,908,424	-				-0.1
1,908,466	+				-0.4
1,908,466	+				-0.0
1,908,466	+				+0.8
1,908,466	+				+0.4
1,908,467	-				+1.6
1,908,588	+		Psest_1809	0.13	+0.8
1,908,589	-		Psest_1809	0.13	-0.7
1,908,609	+		Psest_1809	0.14	-0.0
1,908,699	+		Psest_1809	0.21	-2.8
1,908,699	+		Psest_1809	0.21	+0.6
1,908,700	-		Psest_1809	0.21	+0.6
1,908,700	-		Psest_1809	0.21	+0.6
1,908,745	+		Psest_1809	0.25	-0.2
1,908,745	+		Psest_1809	0.25	+0.6
1,908,745	+		Psest_1809	0.25	+1.6
1,908,830	+		Psest_1809	0.32	-0.2
1,908,845	-		Psest_1809	0.33	+0.6
1,908,845	-		Psest_1809	0.33	-0.4
1,908,863	-		Psest_1809	0.34	+0.2
1,908,947	-		Psest_1809	0.41	+0.3
1,908,993	+		Psest_1809	0.44	-0.4
1,908,994	-		Psest_1809	0.44	+0.9
1,908,994	-		Psest_1809	0.44	-0.4
1,908,994	-		Psest_1809	0.44	+0.1
1,909,092	-		Psest_1809	0.52	+1.6
1,909,129	-		Psest_1809	0.55	+0.3
1,909,170	+		Psest_1809	0.58	+1.1
1,909,170	+		Psest_1809	0.58	-0.8
1,909,170	+		Psest_1809	0.58	-0.3
1,909,170	+		Psest_1809	0.58	-0.0
1,909,171	-		Psest_1809	0.58	+0.7
1,909,171	-		Psest_1809	0.58	-1.9
1,909,171	-		Psest_1809	0.58	+0.8
1,909,171	-		Psest_1809	0.58	+1.7
1,909,171	-		Psest_1809	0.58	+0.1
1,909,171	-		Psest_1809	0.58	+0.7
1,909,171	-		Psest_1809	0.58	-0.4
1,909,190	+		Psest_1809	0.60	-0.9
1,909,191	-		Psest_1809	0.60	+0.2
1,909,226	-		Psest_1809	0.63	+1.4
1,909,226	-		Psest_1809	0.63	+2.5
1,909,399	-		Psest_1809	0.76	-0.6
1,909,401	-		Psest_1809	0.76	+1.4
1,909,430	-		Psest_1809	0.79	+0.3
1,909,430	-		Psest_1809	0.79	-1.4
1,909,430	-		Psest_1809	0.79	+0.6
1,909,436	-		Psest_1809	0.79	-0.1
1,909,436	-		Psest_1809	0.79	+0.4
1,909,436	-		Psest_1809	0.79	-1.3
1,909,436	-		Psest_1809	0.79	+0.2
1,909,436	-		Psest_1809	0.79	+0.6
1,909,436	-		Psest_1809	0.79	+1.2
1,909,439	+		Psest_1809	0.79	+0.6
1,909,439	+		Psest_1809	0.79	+2.0
1,909,439	+		Psest_1809	0.79	+0.7
1,909,439	+		Psest_1809	0.79	-1.0
1,909,450	-		Psest_1809	0.80	+0.3
1,909,482	+		Psest_1809	0.83	-2.0
1,909,482	+		Psest_1809	0.83	-0.9
1,909,483	-		Psest_1809	0.83	+0.6
1,909,483	-		Psest_1809	0.83	+0.1
1,909,483	-		Psest_1809	0.83	-0.3
1,909,483	-		Psest_1809	0.83	-0.9
1,909,569	+		Psest_1809	0.89	-1.4
1,909,570	-		Psest_1809	0.90	+0.6
1,909,570	-		Psest_1809	0.90	+0.3
1,909,570	-		Psest_1809	0.90	+0.8
1,909,570	-		Psest_1809	0.90	+0.4
1,909,614	-				+1.9
1,909,720	+				+0.7
1,909,720	+				+0.4
1,909,720	+				+1.9
1,909,720	+				+0.4
1,909,775	+				+0.9
1,909,775	+				-0.5
1,909,775	+				+0.6
1,909,775	+				+0.3
1,909,776	-				-0.6
1,909,776	-				+0.3
1,909,776	-				-0.1
1,909,776	-				+0.7
1,909,776	-				+0.2
1,909,803	+				-0.9
1,909,803	+				+0.6
1,909,804	-				-1.0
1,909,804	-				+0.4
1,909,804	-				+0.1
1,909,804	-				-0.0
1,909,804	-				+0.1
1,909,804	-				+0.2
1,909,953	+		Psest_1810	0.23	-0.2
1,909,953	+		Psest_1810	0.23	+0.6
1,909,953	+		Psest_1810	0.23	+0.9
1,909,953	+		Psest_1810	0.23	+0.2
1,909,953	+		Psest_1810	0.23	+0.4
1,909,953	+		Psest_1810	0.23	+1.2
1,909,954	-		Psest_1810	0.23	+0.2
1,909,954	-		Psest_1810	0.23	+0.9
1,909,954	-		Psest_1810	0.23	+0.7
1,909,998	+		Psest_1810	0.28	-0.5
1,909,998	+		Psest_1810	0.28	-1.5
1,909,998	+		Psest_1810	0.28	+0.6
1,909,998	+		Psest_1810	0.28	+0.7
1,909,998	+		Psest_1810	0.28	-0.0
1,909,999	-		Psest_1810	0.28	+0.8
1,909,999	-		Psest_1810	0.28	+0.7
1,909,999	-		Psest_1810	0.28	+0.3
1,909,999	-		Psest_1810	0.28	-0.0
1,909,999	-		Psest_1810	0.28	+0.2
1,910,017	+		Psest_1810	0.30	+0.6
1,910,017	+		Psest_1810	0.30	-0.0
1,910,017	+		Psest_1810	0.30	+0.6
1,910,018	-		Psest_1810	0.30	+0.6
1,910,018	-		Psest_1810	0.30	+0.6
1,910,127	+		Psest_1810	0.41	+0.7
1,910,128	-		Psest_1810	0.41	-0.6
1,910,128	-		Psest_1810	0.41	+0.5
1,910,178	+		Psest_1810	0.46	+0.4
1,910,179	-		Psest_1810	0.46	+0.3
1,910,388	+		Psest_1810	0.67	+1.0
1,910,388	+		Psest_1810	0.67	+0.3
1,910,388	+		Psest_1810	0.67	+0.3
1,910,388	+		Psest_1810	0.67	+0.6
1,910,388	+		Psest_1810	0.67	+0.6
1,910,388	+		Psest_1810	0.67	-0.1
1,910,389	-		Psest_1810	0.67	+0.0
1,910,389	-		Psest_1810	0.67	+0.4
1,910,389	-		Psest_1810	0.67	+0.4
1,910,389	-		Psest_1810	0.67	+0.5
1,910,389	-		Psest_1810	0.67	-0.4
1,910,389	-		Psest_1810	0.67	+0.1
1,910,389	-		Psest_1810	0.67	+0.3
1,910,389	-		Psest_1810	0.67	+0.4
1,910,389	-		Psest_1810	0.67	-0.2
1,910,504	+		Psest_1810	0.78	-0.2
1,910,504	+		Psest_1810	0.78	+0.5
1,910,520	+		Psest_1810	0.80	+1.0
1,910,520	+		Psest_1810	0.80	+0.3
1,910,521	-		Psest_1810	0.80	+0.0
1,910,521	-		Psest_1810	0.80	+0.7
1,910,521	-		Psest_1810	0.80	+1.0
1,910,521	-		Psest_1810	0.80	-0.0
1,910,523	+		Psest_1810	0.80	-0.1
1,910,523	+		Psest_1810	0.80	-0.1
1,910,523	+		Psest_1810	0.80	-0.3
1,910,523	+		Psest_1810	0.80	-0.9
1,910,523	+		Psest_1810	0.80	+0.3
1,910,523	+		Psest_1810	0.80	+0.1
1,910,523	+		Psest_1810	0.80	+0.7
1,910,523	+		Psest_1810	0.80	-0.4
1,910,524	-		Psest_1810	0.80	+0.1
1,910,524	-		Psest_1810	0.80	+0.2
1,910,524	-		Psest_1810	0.80	+0.6
1,910,524	-		Psest_1810	0.80	+0.3
1,910,524	-		Psest_1810	0.80	-0.0
1,910,524	-		Psest_1810	0.80	+0.7
1,910,524	-		Psest_1810	0.80	+0.1
1,910,529	+		Psest_1810	0.81	-0.0
1,910,529	+		Psest_1810	0.81	-0.6
1,910,530	-		Psest_1810	0.81	-0.5
1,910,530	-		Psest_1810	0.81	+0.7
1,910,530	-		Psest_1810	0.81	-0.0
1,910,536	-		Psest_1810	0.81	+0.5
1,910,631	+				+0.5
1,910,631	+				-0.4
1,910,631	+				+1.1
1,910,631	+				+1.2
1,910,631	+				-0.1
1,910,631	+				+0.6
1,910,631	+				-0.3
1,910,632	-				+0.1
1,910,642	+				-0.2