Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1538

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,636,611	-		Psest_1536	0.32	-1.1
1,636,796	+		Psest_1536	0.72	-0.8
1,636,796	+		Psest_1536	0.72	+0.1
1,636,797	-		Psest_1536	0.72	-2.9
1,636,835	+		Psest_1536	0.80	-0.3
1,636,835	+		Psest_1536	0.80	-0.6
1,636,835	+		Psest_1536	0.80	-0.4
1,636,835	+		Psest_1536	0.80	+0.9
1,636,836	-		Psest_1536	0.80	-0.3
1,636,836	-		Psest_1536	0.80	+0.7
1,636,836	-		Psest_1536	0.80	-0.6
1,636,836	-		Psest_1536	0.80	+1.2
1,636,836	-		Psest_1536	0.80	+2.1
1,636,836	-		Psest_1536	0.80	+0.2
1,636,856	+		Psest_1536	0.84	+0.2
1,636,856	+		Psest_1536	0.84	+1.3
1,636,856	+		Psest_1536	0.84	+0.1
1,636,857	-		Psest_1536	0.85	-0.4
1,636,857	-		Psest_1536	0.85	-0.6
1,636,857	-		Psest_1536	0.85	+0.1
1,636,871	-		Psest_1536	0.87	-0.3
1,636,931	+				-0.1
1,636,931	+				+0.2
1,636,931	+				+1.1
1,636,931	+				-0.1
1,636,931	+				+0.4
1,636,931	+				+0.1
1,636,931	+				+0.1
1,636,931	+				+0.1
1,636,932	-				+0.3
1,636,932	-				+0.3
1,636,932	-				+0.8
1,636,932	-				+0.1
1,636,932	-				+0.3
1,636,932	-				+2.0
1,636,932	-				-1.4
1,636,958	+				-0.6
1,636,958	+				-0.2
1,636,997	+				-0.1
1,636,998	-				+1.3
1,636,998	-				+0.1
1,636,998	-				+0.3
1,637,146	+		Psest_1537	0.11	+1.5
1,637,172	+		Psest_1537	0.23	+0.4
1,637,172	+		Psest_1537	0.23	+0.0
1,637,172	+		Psest_1537	0.23	-0.9
1,637,173	-		Psest_1537	0.24	-0.4
1,637,173	-		Psest_1537	0.24	-0.9
1,637,173	-		Psest_1537	0.24	-0.6
1,637,173	-		Psest_1537	0.24	+0.1
1,637,284	+		Psest_1537	0.74	+0.1
1,637,284	+		Psest_1537	0.74	-0.1
1,637,284	+		Psest_1537	0.74	+0.3
1,637,284	+		Psest_1537	0.74	-1.1
1,637,284	+		Psest_1537	0.74	-2.1
1,637,285	-		Psest_1537	0.75	-0.2
1,637,285	-		Psest_1537	0.75	-0.6
1,637,285	-		Psest_1537	0.75	-0.1
1,637,285	-		Psest_1537	0.75	-0.7
1,637,285	-		Psest_1537	0.75	-0.6
1,637,285	-		Psest_1537	0.75	-0.9
1,637,285	-		Psest_1537	0.75	-1.3
1,637,285	-		Psest_1537	0.75	+0.0
1,637,285	-		Psest_1537	0.75	-0.2
1,637,285	-		Psest_1537	0.75	+0.3
1,637,285	-		Psest_1537	0.75	+1.2
1,637,285	-		Psest_1537	0.75	-0.7
1,637,289	-		Psest_1537	0.77	-1.3
1,637,289	-		Psest_1537	0.77	-0.3
1,637,289	-		Psest_1537	0.77	+0.4
1,637,289	-		Psest_1537	0.77	-0.1
1,637,289	-		Psest_1537	0.77	+0.5
1,637,289	-		Psest_1537	0.77	-0.3
1,637,335	+				-0.2
1,637,335	+				+4.2
1,637,335	+				-0.6
1,637,336	-				-0.3
1,637,336	-				+0.1
1,637,336	-				-0.7
1,637,336	-				-0.0
1,637,336	-				+0.8
1,637,336	-				-0.3
1,637,336	-				-0.1
1,637,336	-				-0.3
1,637,339	+				-0.0
1,637,339	+				+0.1
1,637,339	+				-0.6
1,637,339	+				+0.2
1,637,339	+				-0.1
1,637,339	+				-0.6
1,637,340	-				-0.7
1,637,340	-				-0.5
1,637,340	-				-0.9
1,637,340	-				+0.4
1,637,340	-				+0.6
1,637,340	-				+0.7
1,637,340	-				+0.2
1,637,340	-				-0.1
1,637,340	-				+0.3
1,637,340	-				-0.6
1,637,340	-				-0.2
1,637,340	-				-0.2
1,637,340	-				-0.0
1,637,423	-				-0.2
1,637,423	-				+0.1
1,637,449	+				-1.2
1,637,449	+				-1.0
1,637,450	-				+0.3
1,637,450	-				-0.2
1,637,450	-				+0.7
1,637,450	-				-0.7
1,637,608	-		Psest_1538	0.12	+0.1
1,637,682	+		Psest_1538	0.25	-0.5
1,637,682	+		Psest_1538	0.25	+0.1
1,637,682	+		Psest_1538	0.25	+0.8
1,637,682	+		Psest_1538	0.25	-0.4
1,637,683	-		Psest_1538	0.26	+0.7
1,637,683	-		Psest_1538	0.26	+0.0
1,637,683	-		Psest_1538	0.26	+1.9
1,637,683	-		Psest_1538	0.26	+0.7
1,637,683	-		Psest_1538	0.26	+2.0
1,637,998	+		Psest_1538	0.84	+0.2
1,637,999	-		Psest_1538	0.84	+0.7
1,638,053	-				-0.9
1,638,169	-				-0.7
1,638,202	-				-0.1
1,638,276	+		Psest_1539	0.12	+0.7
1,638,276	+		Psest_1539	0.12	+0.4
1,638,300	+		Psest_1539	0.14	-1.2
1,638,361	+		Psest_1539	0.19	-1.9
1,638,361	+		Psest_1539	0.19	-1.4
1,638,362	-		Psest_1539	0.19	+0.1
1,638,362	-		Psest_1539	0.19	-0.1
1,638,362	-		Psest_1539	0.19	+2.0
1,638,436	+		Psest_1539	0.25	+0.4
1,638,436	+		Psest_1539	0.25	-0.3
1,638,436	+		Psest_1539	0.25	+0.4
1,638,437	-		Psest_1539	0.25	+0.1
1,638,437	-		Psest_1539	0.25	+0.7
1,638,437	-		Psest_1539	0.25	+0.0
1,638,437	-		Psest_1539	0.25	-1.2
1,638,458	-		Psest_1539	0.27	+0.7
1,638,518	-		Psest_1539	0.32	-0.3
1,638,699	-		Psest_1539	0.47	+0.0
1,638,699	-		Psest_1539	0.47	+1.3
1,638,740	-		Psest_1539	0.50	-0.2