Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0144

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0142 and Psest_0143 are separated by 223 nucleotidesPsest_0143 and Psest_0144 are separated by 92 nucleotidesPsest_0144 and Psest_0145 overlap by 4 nucleotides Psest_0142: Psest_0142 - Micrococcal nuclease (thermonuclease) homologs, at 142,169 to 142,651 _0142 Psest_0143: Psest_0143 - tRNA_Phe_GAA, at 142,875 to 142,950 _0143 Psest_0144: Psest_0144 - Fe-S cluster protector protein, at 143,043 to 143,315 _0144 Psest_0145: Psest_0145 - A/G-specific adenine glycosylase, at 143,312 to 144,379 _0145 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1at 142.123 kb on - strandat 142.288 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.641 kb on + strandat 142.641 kb on + strandat 142.642 kb on - strandat 142.642 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.847 kb on - strandat 142.847 kb on - strandat 143.058 kb on + strandat 143.059 kb on - strandat 143.059 kb on - strandat 143.062 kb on + strandat 143.062 kb on + strandat 143.062 kb on + strandat 143.063 kb on - strandat 143.063 kb on - strandat 143.063 kb on - strandat 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.407 kb on + strandat 143.408 kb on - strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.841 kb on + strand, within Psest_0145at 143.842 kb on - strand, within Psest_0145at 143.842 kb on - strand, within Psest_0145at 143.937 kb on + strand, within Psest_0145at 143.938 kb on - strand, within Psest_0145at 143.938 kb on - strand, within Psest_0145at 144.133 kb on - strand, within Psest_0145at 144.136 kb on - strand, within Psest_0145

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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142,123 - -0.6
142,288 + Psest_0142 0.25 -1.2
142,436 + Psest_0142 0.55 +0.1
142,436 + Psest_0142 0.55 -1.5
142,436 + Psest_0142 0.55 +0.1
142,436 + Psest_0142 0.55 -0.5
142,437 - Psest_0142 0.55 +0.3
142,437 - Psest_0142 0.55 -1.0
142,437 - Psest_0142 0.55 -0.2
142,437 - Psest_0142 0.55 -0.5
142,437 - Psest_0142 0.55 +0.0
142,437 - Psest_0142 0.55 +0.8
142,437 - Psest_0142 0.55 +0.6
142,437 - Psest_0142 0.55 +0.6
142,437 - Psest_0142 0.55 +0.2
142,437 - Psest_0142 0.55 +0.7
142,437 - Psest_0142 0.55 -1.5
142,437 - Psest_0142 0.55 -0.2
142,437 - Psest_0142 0.55 -1.0
142,437 - Psest_0142 0.55 +0.6
142,588 + Psest_0142 0.87 -1.2
142,588 + Psest_0142 0.87 -0.9
142,588 + Psest_0142 0.87 +0.0
142,588 + Psest_0142 0.87 -0.7
142,588 + Psest_0142 0.87 -1.1
142,588 + Psest_0142 0.87 +0.8
142,588 + Psest_0142 0.87 -0.2
142,589 - Psest_0142 0.87 -1.2
142,589 - Psest_0142 0.87 -0.1
142,589 - Psest_0142 0.87 +0.5
142,589 - Psest_0142 0.87 -0.1
142,589 - Psest_0142 0.87 -0.2
142,589 - Psest_0142 0.87 +0.2
142,589 - Psest_0142 0.87 -0.6
142,589 - Psest_0142 0.87 +0.2
142,589 - Psest_0142 0.87 -0.9
142,589 - Psest_0142 0.87 +0.6
142,589 - Psest_0142 0.87 -0.1
142,589 - Psest_0142 0.87 +0.3
142,589 - Psest_0142 0.87 +0.1
142,592 + Psest_0142 0.88 +0.6
142,592 + Psest_0142 0.88 +0.2
142,592 + Psest_0142 0.88 +0.7
142,592 + Psest_0142 0.88 -0.6
142,592 + Psest_0142 0.88 -0.5
142,592 + Psest_0142 0.88 -0.3
142,593 - Psest_0142 0.88 -0.3
142,593 - Psest_0142 0.88 +0.5
142,593 - Psest_0142 0.88 -0.5
142,593 - Psest_0142 0.88 +0.6
142,593 - Psest_0142 0.88 -0.5
142,593 - Psest_0142 0.88 +0.4
142,593 - Psest_0142 0.88 +0.4
142,593 - Psest_0142 0.88 -0.7
142,593 - Psest_0142 0.88 -0.1
142,593 - Psest_0142 0.88 +0.4
142,593 - Psest_0142 0.88 -0.1
142,641 + -0.8
142,641 + +0.3
142,642 - +1.2
142,642 - +0.1
142,766 - -0.7
142,766 - +0.3
142,766 - +0.9
142,766 - -0.5
142,766 - -0.1
142,847 - -1.0
142,847 - -1.4
143,058 + -1.6
143,059 - +0.0
143,059 - +0.3
143,062 + +0.4
143,062 + -0.4
143,062 + -0.6
143,063 - +0.2
143,063 - -0.9
143,063 - +0.4
143,080 + Psest_0144 0.14 +1.0
143,080 + Psest_0144 0.14 -0.1
143,080 + Psest_0144 0.14 +0.7
143,080 + Psest_0144 0.14 +0.5
143,224 + Psest_0144 0.66 -0.6
143,224 + Psest_0144 0.66 -1.2
143,224 + Psest_0144 0.66 -0.2
143,224 + Psest_0144 0.66 +0.0
143,224 + Psest_0144 0.66 +0.5
143,224 + Psest_0144 0.66 +0.1
143,225 - Psest_0144 0.67 +0.9
143,225 - Psest_0144 0.67 +0.2
143,225 - Psest_0144 0.67 -0.9
143,225 - Psest_0144 0.67 +0.6
143,225 - Psest_0144 0.67 +0.1
143,225 - Psest_0144 0.67 -1.4
143,225 - Psest_0144 0.67 -0.0
143,225 - Psest_0144 0.67 -0.9
143,225 - Psest_0144 0.67 -2.1
143,225 - Psest_0144 0.67 +1.2
143,287 + Psest_0144 0.89 -1.4
143,287 + Psest_0144 0.89 -2.2
143,287 + Psest_0144 0.89 -0.4
143,287 + Psest_0144 0.89 -0.9
143,287 + Psest_0144 0.89 -1.4
143,288 - +1.3
143,288 - -0.5
143,288 - -2.2
143,288 - +0.6
143,288 - +0.6
143,288 - +0.1
143,407 + +0.0
143,408 - -0.0
143,409 + +0.2
143,409 + +0.0
143,409 + +0.6
143,410 - -0.3
143,410 - -1.1
143,410 - +0.5
143,410 - -1.2
143,841 + Psest_0145 0.50 +0.2
143,842 - Psest_0145 0.50 -0.1
143,842 - Psest_0145 0.50 +0.0
143,937 + Psest_0145 0.59 +0.7
143,938 - Psest_0145 0.59 -0.5
143,938 - Psest_0145 0.59 +0.1
144,133 - Psest_0145 0.77 +0.6
144,136 - Psest_0145 0.77 -0.3

Or see this region's nucleotide sequence