Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1449

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,556,384	-		Psest_1447	0.39	+0.0
1,556,533	-		Psest_1447	0.62	+0.1
1,556,602	-		Psest_1447	0.73	-1.1
1,556,847	+				+0.8
1,556,847	+				+1.2
1,556,847	+				+0.5
1,556,847	+				+1.8
1,556,847	+				+0.1
1,556,848	-				+1.0
1,556,848	-				+0.0
1,556,848	-				+0.8
1,556,848	-				-0.5
1,556,848	-				-0.0
1,556,848	-				+0.1
1,556,848	-				+0.5
1,556,848	-				-0.7
1,556,848	-				-0.5
1,557,053	-		Psest_1448	0.45	+0.2
1,557,105	+		Psest_1448	0.56	+0.2
1,557,105	+		Psest_1448	0.56	+0.2
1,557,105	+		Psest_1448	0.56	+1.8
1,557,106	-		Psest_1448	0.57	-0.2
1,557,106	-		Psest_1448	0.57	-0.2
1,557,109	+		Psest_1448	0.57	+1.8
1,557,109	+		Psest_1448	0.57	-0.4
1,557,109	+		Psest_1448	0.57	+0.4
1,557,109	+		Psest_1448	0.57	-0.8
1,557,110	-		Psest_1448	0.57	+1.2
1,557,110	-		Psest_1448	0.57	-0.3
1,557,110	-		Psest_1448	0.57	+0.4
1,557,110	-		Psest_1448	0.57	-1.0
1,557,110	-		Psest_1448	0.57	-1.2
1,557,110	-		Psest_1448	0.57	-0.6
1,557,110	-		Psest_1448	0.57	-0.2
1,557,110	-		Psest_1448	0.57	-0.0
1,557,110	-		Psest_1448	0.57	-0.0
1,557,110	-		Psest_1448	0.57	-0.2
1,557,110	-		Psest_1448	0.57	-0.0
1,557,110	-		Psest_1448	0.57	-0.9
1,557,110	-		Psest_1448	0.57	-1.8
1,557,110	-		Psest_1448	0.57	+0.5
1,557,110	-		Psest_1448	0.57	-0.7
1,557,110	-		Psest_1448	0.57	-0.4
1,557,110	-		Psest_1448	0.57	-1.7
1,557,110	-		Psest_1448	0.57	-0.2
1,557,110	-		Psest_1448	0.57	-0.2
1,557,110	-		Psest_1448	0.57	-2.4
1,557,197	-		Psest_1448	0.77	+0.9
1,557,256	+		Psest_1448	0.89	+0.2
1,557,256	+		Psest_1448	0.89	-1.0
1,557,256	+		Psest_1448	0.89	+0.4
1,557,257	-		Psest_1448	0.90	+1.6
1,557,352	+				-0.6
1,557,352	+				-0.2
1,557,352	+				+1.8
1,557,356	+				-0.2
1,557,356	+				-0.2
1,557,357	-				+0.5
1,557,357	-				+0.4
1,557,357	-				+3.4
1,557,357	-				-0.2
1,557,418	+				-0.8
1,557,745	-		Psest_1449	0.37	+0.2
1,557,774	+		Psest_1449	0.40	-0.6
1,557,775	-		Psest_1449	0.40	-1.2
1,557,932	+		Psest_1449	0.56	+0.8
1,557,933	-		Psest_1449	0.56	-2.0
1,557,933	-		Psest_1449	0.56	+1.4
1,557,933	-		Psest_1449	0.56	-0.8
1,557,933	-		Psest_1449	0.56	-0.2
1,557,990	+		Psest_1449	0.62	-1.2
1,557,990	+		Psest_1449	0.62	+0.4
1,557,990	+		Psest_1449	0.62	+0.8
1,557,990	+		Psest_1449	0.62	-1.8
1,557,990	+		Psest_1449	0.62	-0.1
1,557,990	+		Psest_1449	0.62	-1.5
1,557,990	+		Psest_1449	0.62	+0.8
1,557,990	+		Psest_1449	0.62	-0.2
1,557,990	+		Psest_1449	0.62	+1.1
1,557,991	-				-0.2
1,557,991	-		Psest_1449	0.62	+0.8
1,557,991	-		Psest_1449	0.62	-1.8
1,557,991	-		Psest_1449	0.62	-0.2
1,557,991	-		Psest_1449	0.62	-1.2
1,557,991	-		Psest_1449	0.62	-0.2
1,557,991	-		Psest_1449	0.62	-0.4
1,557,991	-		Psest_1449	0.62	+0.8
1,557,991	-		Psest_1449	0.62	+0.2
1,558,082	+		Psest_1449	0.72	+0.2
1,559,302	-				+0.0
1,559,302	-				-1.3
1,559,302	-				+0.8
1,559,302	-				+2.3
1,559,302	-				+0.2
1,559,302	-				-0.6
1,559,302	-				+0.8