Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0123

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
117,562	+				-0.1
117,562	+				-0.4
117,563	-				-0.4
117,563	-				-1.0
117,563	-				+2.2
117,563	-				+1.2
117,659	+				-1.2
117,659	+				+0.5
117,660	-				-0.2
117,660	-				+1.2
117,660	-				+0.5
117,660	-				-0.9
117,708	+		Psest_0122	0.16	+3.2
117,708	+		Psest_0122	0.16	-0.2
117,709	-		Psest_0122	0.16	-0.1
117,831	-		Psest_0122	0.30	+1.5
118,068	+		Psest_0122	0.58	+0.9
118,068	+		Psest_0122	0.58	+0.3
118,069	-		Psest_0122	0.58	-0.6
118,069	-		Psest_0122	0.58	-0.0
118,230	+		Psest_0122	0.77	+0.1
118,230	+		Psest_0122	0.77	+0.6
118,230	+		Psest_0122	0.77	+0.7
118,231	-		Psest_0122	0.77	-2.7
118,279	-		Psest_0122	0.82	-1.5
118,314	+		Psest_0122	0.86	-0.7
118,314	+		Psest_0122	0.86	+2.0
118,314	+		Psest_0122	0.86	+0.6
118,314	+		Psest_0122	0.86	-1.4
118,314	+		Psest_0122	0.86	+1.4
118,314	+		Psest_0122	0.86	-0.2
118,315	-		Psest_0122	0.87	+1.1
118,315	-		Psest_0122	0.87	+1.7
118,315	-		Psest_0122	0.87	+0.9
118,359	+				+1.2
118,360	-				+2.8
118,360	-				+0.2
118,360	-				+0.6
118,360	-				-0.3
118,391	+				-0.4
118,391	+				+0.1
118,391	+				+1.2
118,391	+				-0.4
118,391	+				+0.6
118,392	-				-1.9
118,392	-				+0.2
118,392	-				-0.1
118,392	-				-0.5
118,392	-				+1.8
118,392	-				-1.9
118,589	-				+0.2
118,757	+		Psest_0123	0.17	+1.5
118,757	+		Psest_0123	0.17	-0.4
118,757	+		Psest_0123	0.17	-0.7
118,757	+		Psest_0123	0.17	-0.8
118,757	+		Psest_0123	0.17	-1.1
118,758	-		Psest_0123	0.17	-1.6
118,758	-		Psest_0123	0.17	+1.2
118,758	-		Psest_0123	0.17	+2.2
118,818	+		Psest_0123	0.20	-0.6
118,907	+		Psest_0123	0.24	+0.3
118,907	+		Psest_0123	0.24	-1.2
118,907	+		Psest_0123	0.24	-0.9
118,907	+		Psest_0123	0.24	-0.8
118,907	+		Psest_0123	0.24	+2.2
118,907	+		Psest_0123	0.24	+0.2
118,907	+		Psest_0123	0.24	-0.4
118,908	-		Psest_0123	0.24	-0.5
118,908	-		Psest_0123	0.24	+0.5
118,908	-		Psest_0123	0.24	+0.2
118,908	-		Psest_0123	0.24	-0.8
118,908	-		Psest_0123	0.24	-0.8
118,908	-		Psest_0123	0.24	+0.5
118,908	-		Psest_0123	0.24	-0.4
119,003	+		Psest_0123	0.29	-0.8
119,003	+		Psest_0123	0.29	+0.5
119,003	+		Psest_0123	0.29	+0.2
119,004	-		Psest_0123	0.29	-1.4
119,004	-		Psest_0123	0.29	-0.2
119,004	-		Psest_0123	0.29	-0.4
119,004	-		Psest_0123	0.29	-0.8
119,004	-		Psest_0123	0.29	+0.8
119,004	-		Psest_0123	0.29	+0.0
119,004	-		Psest_0123	0.29	-0.1
119,004	-		Psest_0123	0.29	+2.2
119,138	+		Psest_0123	0.35	+0.0
119,539	-		Psest_0123	0.54	-1.5
119,539	-		Psest_0123	0.54	-0.9
119,539	-		Psest_0123	0.54	-0.5
119,744	+		Psest_0123	0.64	-1.1
119,817	-		Psest_0123	0.67	+0.2
119,912	+		Psest_0123	0.72	-1.6
119,996	+		Psest_0123	0.76	+1.1
119,996	+		Psest_0123	0.76	+0.2
120,053	+		Psest_0123	0.79	-0.2
120,053	+		Psest_0123	0.79	+1.6
120,065	+		Psest_0123	0.79	+0.1
120,065	+		Psest_0123	0.79	-0.6
120,207	-		Psest_0123	0.86	+0.6
120,280	+		Psest_0123	0.89	-1.4
120,280	+		Psest_0123	0.89	+1.6
120,280	+		Psest_0123	0.89	-0.4
120,280	+		Psest_0123	0.89	-1.4
120,280	+		Psest_0123	0.89	-1.9
120,280	+		Psest_0123	0.89	+0.2
120,280	+		Psest_0123	0.89	+0.5
120,280	+		Psest_0123	0.89	+0.6
120,280	+		Psest_0123	0.89	-0.8
120,281	-		Psest_0123	0.89	-0.1
120,519	-				+3.8
120,519	-				+1.6
120,519	-				-0.3
120,519	-				+0.1
120,715	+		Psest_0124	0.13	+1.2
120,715	+		Psest_0124	0.13	-1.5
120,715	+		Psest_0124	0.13	-0.8
120,715	+		Psest_0124	0.13	+1.2
120,715	+		Psest_0124	0.13	+0.2
120,715	+		Psest_0124	0.13	+1.8
120,716	-		Psest_0124	0.13	+0.0
120,716	-		Psest_0124	0.13	-0.4
120,716	-		Psest_0124	0.13	+0.1
120,716	-		Psest_0124	0.13	-1.1
120,716	-		Psest_0124	0.13	+0.9
120,962	+		Psest_0124	0.29	+0.2
121,276	+		Psest_0124	0.50	+0.5
121,276	+		Psest_0124	0.50	-0.4
121,407	-		Psest_0124	0.59	+1.2