Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0121

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
115,325	+		Psest_0118	0.55	+1.0
115,325	+		Psest_0118	0.55	-1.8
115,325	+		Psest_0118	0.55	-1.8
115,325	+		Psest_0118	0.55	-1.1
115,325	+		Psest_0118	0.55	-0.7
115,326	-		Psest_0118	0.55	-0.8
115,326	-		Psest_0118	0.55	-0.4
115,326	-		Psest_0118	0.55	+0.2
115,326	-		Psest_0118	0.55	-0.8
115,326	-		Psest_0118	0.55	+0.7
115,326	-		Psest_0118	0.55	-0.8
115,326	-		Psest_0118	0.55	+1.2
115,326	-		Psest_0118	0.55	+0.0
115,473	+		Psest_0118	0.87	+0.6
115,474	-		Psest_0118	0.87	-0.4
115,474	-		Psest_0118	0.87	-0.1
115,474	-		Psest_0118	0.87	-1.8
115,650	+		Psest_0119	0.45	-0.9
115,650	+		Psest_0119	0.45	+0.6
115,651	-		Psest_0119	0.46	+1.2
115,651	-		Psest_0119	0.46	-0.4
115,651	-		Psest_0119	0.46	-0.4
115,834	-				+0.6
115,907	-				-1.1
115,907	-				+0.0
115,907	-				-1.6
115,907	-				+0.5
115,907	-				+0.1
115,907	-				+0.0
115,907	-				-1.6
115,907	-				+0.0
115,933	-				-0.9
115,933	-				-0.8
115,933	-				+1.1
115,933	-				-1.4
115,933	-				+0.4
115,985	-				-1.4
115,985	-				-1.2
115,988	-				+0.5
115,991	+				-0.7
116,026	+		Psest_0120	0.14	-0.4
116,065	-		Psest_0120	0.26	+0.1
116,090	+		Psest_0120	0.33	+0.6
116,090	+		Psest_0120	0.33	+0.2
116,091	-		Psest_0120	0.33	+0.7
116,091	-		Psest_0120	0.33	+0.2
116,164	+		Psest_0120	0.54	+0.2
116,166	+		Psest_0120	0.55	+0.2
116,166	+		Psest_0120	0.55	-0.1
116,203	-		Psest_0120	0.66	+1.0
116,238	+		Psest_0120	0.76	+1.0
116,239	-		Psest_0120	0.76	+0.6
116,239	-		Psest_0120	0.76	+2.2
116,239	-		Psest_0120	0.76	+0.2
116,288	+				+0.4
116,288	+				-0.9
116,288	+				-0.8
116,288	+				+0.7
116,289	-				-0.4
116,320	+				+0.0
116,321	-				-0.6
116,339	-				-0.8
116,342	+				+0.2
116,342	+				+0.1
116,342	+				+0.2
116,342	+				+0.2
116,342	+				+1.2
116,343	-				-0.1
116,389	+				+0.9
116,567	+		Psest_0121	0.20	-0.8
116,567	+		Psest_0121	0.20	+0.6
116,567	+		Psest_0121	0.20	+0.1
116,568	-		Psest_0121	0.20	+0.6
116,568	-		Psest_0121	0.20	+0.3
116,656	+		Psest_0121	0.27	+1.2
116,657	-		Psest_0121	0.27	-0.5
116,657	-		Psest_0121	0.27	-0.4
116,662	-		Psest_0121	0.27	+0.2
116,771	+		Psest_0121	0.36	-0.4
116,775	+		Psest_0121	0.36	-1.5
116,775	+		Psest_0121	0.36	+2.2
116,776	-		Psest_0121	0.36	-1.1
116,820	-		Psest_0121	0.40	-0.0
116,820	-		Psest_0121	0.40	-0.4
116,884	+		Psest_0121	0.45	+0.2
116,884	+		Psest_0121	0.45	+0.1
116,884	+		Psest_0121	0.45	-0.8
116,938	+		Psest_0121	0.49	-1.2
116,938	+		Psest_0121	0.49	-0.9
116,938	+		Psest_0121	0.49	-0.4
116,938	+		Psest_0121	0.49	+0.2
116,938	+		Psest_0121	0.49	-0.1
117,007	-		Psest_0121	0.55	+0.0
117,007	-		Psest_0121	0.55	-0.4
117,055	+		Psest_0121	0.59	-2.2
117,055	+		Psest_0121	0.59	+1.2
117,055	+		Psest_0121	0.59	+0.6
117,056	-		Psest_0121	0.59	-1.4
117,056	-		Psest_0121	0.59	+0.0
117,056	-		Psest_0121	0.59	-0.4
117,056	-		Psest_0121	0.59	+0.5
117,056	-		Psest_0121	0.59	-0.4
117,056	-		Psest_0121	0.59	-1.4
117,289	+		Psest_0121	0.77	-0.4
117,289	+		Psest_0121	0.77	-0.2
117,289	+		Psest_0121	0.77	+1.2
117,289	+		Psest_0121	0.77	+0.1
117,290	-		Psest_0121	0.78	+0.2
117,290	-		Psest_0121	0.78	+0.5
117,290	-		Psest_0121	0.78	-0.4
117,290	-		Psest_0121	0.78	+0.0
117,290	-		Psest_0121	0.78	-0.3
117,290	-		Psest_0121	0.78	-0.4
117,301	+		Psest_0121	0.78	+0.5
117,301	+		Psest_0121	0.78	+1.8
117,301	+		Psest_0121	0.78	+0.2
117,301	+		Psest_0121	0.78	-1.2
117,301	+		Psest_0121	0.78	+2.2
117,301	+		Psest_0121	0.78	-0.2
117,301	+		Psest_0121	0.78	+1.2
117,301	+		Psest_0121	0.78	+0.6
117,301	+		Psest_0121	0.78	-0.4
117,301	+		Psest_0121	0.78	-0.8
117,301	+		Psest_0121	0.78	-1.4
117,301	+		Psest_0121	0.78	-2.4
117,301	+		Psest_0121	0.78	+0.2
117,301	+		Psest_0121	0.78	+0.7
117,301	+		Psest_0121	0.78	+1.6
117,302	-		Psest_0121	0.79	+0.0
117,302	-		Psest_0121	0.79	-0.4
117,302	-		Psest_0121	0.79	+0.2
117,302	-		Psest_0121	0.79	-0.4
117,302	-		Psest_0121	0.79	-0.0
117,302	-		Psest_0121	0.79	-1.4
117,302	-		Psest_0121	0.79	+2.8
117,337	+		Psest_0121	0.81	-0.6
117,338	-		Psest_0121	0.81	-0.5
117,338	-		Psest_0121	0.81	-1.8
117,338	-		Psest_0121	0.81	+1.6
117,562	+				-0.1
117,562	+				-0.4
117,563	-				-0.4
117,563	-				-1.0
117,563	-				+2.2
117,563	-				+1.2
117,659	+				-1.2
117,659	+				+0.5
117,660	-				-0.2
117,660	-				+1.2
117,660	-				+0.5
117,660	-				-0.9
117,708	+		Psest_0122	0.16	+3.2
117,708	+		Psest_0122	0.16	-0.2
117,709	-		Psest_0122	0.16	-0.1
117,831	-		Psest_0122	0.30	+1.5
118,068	+		Psest_0122	0.58	+0.9
118,068	+		Psest_0122	0.58	+0.3
118,069	-		Psest_0122	0.58	-0.6
118,069	-		Psest_0122	0.58	-0.0
118,230	+		Psest_0122	0.77	+0.1
118,230	+		Psest_0122	0.77	+0.6
118,230	+		Psest_0122	0.77	+0.7
118,231	-		Psest_0122	0.77	-2.7
118,279	-		Psest_0122	0.82	-1.5
118,314	+		Psest_0122	0.86	-0.7
118,314	+		Psest_0122	0.86	+2.0
118,314	+		Psest_0122	0.86	+0.6
118,314	+		Psest_0122	0.86	-1.4
118,314	+		Psest_0122	0.86	+1.4
118,314	+		Psest_0122	0.86	-0.2
118,315	-		Psest_0122	0.87	+1.1
118,315	-		Psest_0122	0.87	+1.7
118,315	-		Psest_0122	0.87	+0.9
118,359	+				+1.2
118,360	-				+2.8
118,360	-				+0.2
118,360	-				+0.6
118,360	-				-0.3
118,391	+				-0.4
118,391	+				+0.1
118,391	+				+1.2
118,391	+				-0.4
118,391	+				+0.6
118,392	-				-1.9
118,392	-				+0.2
118,392	-				-0.1
118,392	-				-0.5
118,392	-				+1.8
118,392	-				-1.9