Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1193

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,293,889	-				+0.3
1,293,889	-				-0.4
1,293,889	-				+0.1
1,294,086	+		Psest_1192	0.13	-0.5
1,294,086	+		Psest_1192	0.13	+0.1
1,294,086	+		Psest_1192	0.13	+0.8
1,294,086	+		Psest_1192	0.13	-0.9
1,294,086	+		Psest_1192	0.13	-0.6
1,294,087	-		Psest_1192	0.13	+0.2
1,294,087	-		Psest_1192	0.13	-1.2
1,294,087	-		Psest_1192	0.13	-0.3
1,294,087	-		Psest_1192	0.13	+0.1
1,294,087	-		Psest_1192	0.13	+0.6
1,294,087	-		Psest_1192	0.13	+0.1
1,294,087	-		Psest_1192	0.13	-0.6
1,294,087	-		Psest_1192	0.13	-0.2
1,294,087	-		Psest_1192	0.13	-0.6
1,294,128	+		Psest_1192	0.18	+0.4
1,294,128	+		Psest_1192	0.18	+0.9
1,294,128	+		Psest_1192	0.18	+0.0
1,294,128	+		Psest_1192	0.18	+0.3
1,294,129	-		Psest_1192	0.18	+0.2
1,294,129	-		Psest_1192	0.18	-0.6
1,294,129	-		Psest_1192	0.18	-0.2
1,294,167	+		Psest_1192	0.23	-0.5
1,294,167	+		Psest_1192	0.23	-1.2
1,294,167	+		Psest_1192	0.23	+0.2
1,294,167	+		Psest_1192	0.23	+0.2
1,294,167	+		Psest_1192	0.23	-0.4
1,294,167	+		Psest_1192	0.23	-1.1
1,294,168	-		Psest_1192	0.23	-1.0
1,294,168	-		Psest_1192	0.23	+0.9
1,294,168	-		Psest_1192	0.23	-0.9
1,294,168	-		Psest_1192	0.23	+0.3
1,294,215	+		Psest_1192	0.29	-1.0
1,294,216	-		Psest_1192	0.29	-0.4
1,294,326	+		Psest_1192	0.42	-0.1
1,294,326	+		Psest_1192	0.42	+0.1
1,294,326	+		Psest_1192	0.42	-0.5
1,294,326	+		Psest_1192	0.42	+0.4
1,294,326	+		Psest_1192	0.42	-0.2
1,294,326	+		Psest_1192	0.42	+0.2
1,294,326	+		Psest_1192	0.42	-0.2
1,294,326	+		Psest_1192	0.42	-0.1
1,294,326	+		Psest_1192	0.42	+0.2
1,294,327	-		Psest_1192	0.42	+1.0
1,294,327	-		Psest_1192	0.42	+1.2
1,294,327	-		Psest_1192	0.42	-0.4
1,294,327	-		Psest_1192	0.42	-0.4
1,294,327	-		Psest_1192	0.42	+0.8
1,294,327	-		Psest_1192	0.42	-1.2
1,294,327	-		Psest_1192	0.42	+0.5
1,294,327	-		Psest_1192	0.42	-0.5
1,294,327	-		Psest_1192	0.42	+0.2
1,294,327	-		Psest_1192	0.42	+0.5
1,294,327	-		Psest_1192	0.42	-0.1
1,294,327	-		Psest_1192	0.42	+0.8
1,294,327	-		Psest_1192	0.42	+0.8
1,294,327	-		Psest_1192	0.42	+0.1
1,294,330	+		Psest_1192	0.43	-0.4
1,294,330	+		Psest_1192	0.43	-0.7
1,294,389	+		Psest_1192	0.50	+0.8
1,294,434	+		Psest_1192	0.55	-0.0
1,294,434	+		Psest_1192	0.55	-0.3
1,294,528	-		Psest_1192	0.67	+1.0
1,294,530	+		Psest_1192	0.67	-0.7
1,294,531	-		Psest_1192	0.67	-0.9
1,294,531	-		Psest_1192	0.67	-1.2
1,294,698	+		Psest_1192	0.87	-0.1
1,294,698	+		Psest_1192	0.87	-0.2
1,294,699	-		Psest_1192	0.87	+0.2
1,294,699	-		Psest_1192	0.87	+0.3
1,294,699	-		Psest_1192	0.87	-0.1
1,294,699	-		Psest_1192	0.87	+1.8
1,294,699	-		Psest_1192	0.87	+0.9
1,294,829	+				-0.1
1,294,829	+				-0.8
1,294,829	+				+0.5
1,294,830	-				+1.6
1,294,830	-				+1.8
1,294,873	+				-1.4
1,294,873	+				-0.8
1,295,119	+		Psest_1193	0.15	+0.3
1,295,119	+		Psest_1193	0.15	-0.6
1,295,119	+		Psest_1193	0.15	-1.4
1,295,119	+		Psest_1193	0.15	-1.3
1,295,120	-		Psest_1193	0.15	-0.9
1,295,268	+		Psest_1193	0.25	-0.2
1,295,268	+		Psest_1193	0.25	-0.2
1,295,269	-		Psest_1193	0.25	-0.5
1,295,345	-		Psest_1193	0.30	-0.6
1,295,363	+		Psest_1193	0.31	-0.4
1,295,363	+		Psest_1193	0.31	+0.1
1,295,363	+		Psest_1193	0.31	-0.5
1,295,363	+		Psest_1193	0.31	-0.3
1,295,363	+		Psest_1193	0.31	-0.2
1,295,363	+		Psest_1193	0.31	+0.5
1,295,363	+		Psest_1193	0.31	-0.4
1,295,363	+		Psest_1193	0.31	+1.0
1,295,364	-		Psest_1193	0.32	+0.1
1,295,364	-		Psest_1193	0.32	-0.6
1,295,364	-		Psest_1193	0.32	+0.5
1,295,364	-		Psest_1193	0.32	+0.1
1,295,364	-		Psest_1193	0.32	-0.3
1,295,364	-		Psest_1193	0.32	-0.7
1,295,364	-		Psest_1193	0.32	+0.6
1,295,364	-		Psest_1193	0.32	-2.1
1,295,364	-		Psest_1193	0.32	-2.4
1,295,364	-		Psest_1193	0.32	-0.2
1,295,364	-		Psest_1193	0.32	-1.8
1,295,364	-		Psest_1193	0.32	-2.0
1,295,364	-		Psest_1193	0.32	+0.8
1,295,364	-		Psest_1193	0.32	-0.7
1,295,364	-		Psest_1193	0.32	-0.7
1,295,364	-		Psest_1193	0.32	+0.2
1,295,510	+		Psest_1193	0.41	-0.4
1,295,510	+		Psest_1193	0.41	+0.1
1,295,510	+		Psest_1193	0.41	+0.3
1,295,511	-		Psest_1193	0.41	-0.3
1,295,511	-		Psest_1193	0.41	-0.1
1,295,511	-		Psest_1193	0.41	+0.2
1,296,165	+		Psest_1193	0.85	+0.1
1,296,204	-		Psest_1193	0.87	-0.4
1,296,212	+		Psest_1193	0.88	-0.3
1,296,212	+		Psest_1193	0.88	-0.5
1,296,212	+		Psest_1193	0.88	-0.1
1,296,212	+		Psest_1193	0.88	+0.3
1,296,212	+		Psest_1193	0.88	-0.9
1,296,212	+		Psest_1193	0.88	+0.1
1,296,212	+		Psest_1193	0.88	-1.3
1,296,213	-		Psest_1193	0.88	-0.5
1,296,213	-		Psest_1193	0.88	-1.2
1,296,213	-		Psest_1193	0.88	-1.5
1,296,213	-		Psest_1193	0.88	+0.1
1,296,213	-		Psest_1193	0.88	-1.4
1,296,280	+				+0.2
1,296,280	+				+0.5
1,296,281	-				+0.1
1,296,281	-				+0.0
1,296,281	-				-0.0
1,296,338	+				-1.0
1,296,338	+				-0.0
1,296,338	+				-0.5
1,296,421	+				-1.8
1,296,421	+				+1.1
1,296,421	+				-0.1
1,296,421	+				+0.5
1,296,422	-				+1.4
1,296,422	-				+0.3
1,296,422	-				-0.1
1,296,422	-				+0.3
1,296,422	-				-0.1
1,296,499	+				-0.2
1,296,499	+				-0.2
1,296,500	-				+1.7
1,296,501	+				+0.8
1,296,501	+				+0.1
1,296,502	-				+0.8
1,296,502	-				+1.0
1,296,639	+				+0.1
1,296,639	+				-0.5
1,296,639	+				+0.1
1,296,640	-				+1.4
1,296,640	-				-0.2
1,296,640	-				-1.2
1,296,640	-				+0.7
1,296,640	-				+0.8
1,296,640	-				+0.1
1,296,640	-				-0.3
1,296,640	-				+1.5
1,296,643	+				-0.5
1,296,643	+				+1.1
1,296,643	+				-0.1
1,296,687	+				-0.5
1,296,688	-				-0.2
1,296,688	-				-0.0
1,296,688	-				-0.5
1,296,878	+		Psest_1194	0.20	-0.3
1,296,878	+		Psest_1194	0.20	-0.1
1,296,879	-		Psest_1194	0.20	-0.2
1,296,939	+		Psest_1194	0.24	+0.0
1,297,065	+		Psest_1194	0.32	+0.6
1,297,066	-		Psest_1194	0.32	-0.8
1,297,155	-		Psest_1194	0.38	+1.1
1,297,188	+		Psest_1194	0.40	-0.3
1,297,188	+		Psest_1194	0.40	-1.7
1,297,189	-		Psest_1194	0.40	+0.8
1,297,189	-		Psest_1194	0.40	-0.0
1,297,189	-		Psest_1194	0.40	-0.3
1,297,189	-		Psest_1194	0.40	-1.7
1,297,189	-		Psest_1194	0.40	-0.8