Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1125

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,221,003	-		Psest_1124	0.69	+0.1
1,221,053	+		Psest_1124	0.71	-0.5
1,221,209	+		Psest_1124	0.77	+0.4
1,221,209	+		Psest_1124	0.77	+0.0
1,221,209	+		Psest_1124	0.77	-2.0
1,221,209	+		Psest_1124	0.77	-0.1
1,221,210	-		Psest_1124	0.77	+1.5
1,221,210	-		Psest_1124	0.77	-0.1
1,221,210	-		Psest_1124	0.77	+0.6
1,221,210	-		Psest_1124	0.77	+0.2
1,221,210	-		Psest_1124	0.77	+0.1
1,221,210	-		Psest_1124	0.77	+0.9
1,221,210	-		Psest_1124	0.77	+1.0
1,221,210	-		Psest_1124	0.77	-1.1
1,221,245	+		Psest_1124	0.78	+0.5
1,221,245	+		Psest_1124	0.78	-1.0
1,221,246	-		Psest_1124	0.78	+0.0
1,221,246	-		Psest_1124	0.78	-0.2
1,221,256	-		Psest_1124	0.79	+0.4
1,221,273	-		Psest_1124	0.79	+0.2
1,221,486	+		Psest_1124	0.87	-1.5
1,221,487	-		Psest_1124	0.87	+0.3
1,221,487	-		Psest_1124	0.87	-0.0
1,221,497	+		Psest_1124	0.88	-1.4
1,221,497	+		Psest_1124	0.88	-0.6
1,221,497	+		Psest_1124	0.88	+0.1
1,221,497	+		Psest_1124	0.88	-0.5
1,221,497	+		Psest_1124	0.88	+0.5
1,221,497	+		Psest_1124	0.88	+0.1
1,221,498	-		Psest_1124	0.88	+0.1
1,221,498	-		Psest_1124	0.88	-0.4
1,221,498	-		Psest_1124	0.88	+0.4
1,221,498	-		Psest_1124	0.88	+0.8
1,221,498	-		Psest_1124	0.88	+0.2
1,221,498	-		Psest_1124	0.88	-0.4
1,221,498	-		Psest_1124	0.88	+0.0
1,221,498	-		Psest_1124	0.88	+0.4
1,221,711	+				-0.2
1,221,711	+				-0.0
1,221,711	+				+0.4
1,221,711	+				-0.2
1,221,711	+				+0.2
1,221,711	+				-0.6
1,221,711	+				+0.7
1,221,712	-				+0.7
1,221,712	-				-0.8
1,221,712	-				-0.1
1,221,712	-				+0.5
1,221,721	+				-0.1
1,221,721	+				-0.5
1,221,722	-				+0.3
1,221,754	+				+1.0
1,221,755	-				+1.1
1,221,755	-				+1.0
1,221,862	-				-0.0
1,221,992	+				+0.2
1,221,992	+				+0.4
1,221,992	+				+0.0
1,222,125	+		Psest_1125	0.50	+0.6
1,222,126	-		Psest_1125	0.51	-0.1
1,222,127	+		Psest_1125	0.51	+1.0
1,222,127	+		Psest_1125	0.51	+0.4
1,222,128	-		Psest_1125	0.51	+1.2
1,222,128	-		Psest_1125	0.51	-2.7
1,222,211	+		Psest_1125	0.82	+0.4
1,222,211	+		Psest_1125	0.82	+0.1
1,222,212	-		Psest_1125	0.83	+0.4
1,222,265	+				-0.7
1,222,365	+				-0.3
1,222,366	-				+0.4
1,222,366	-				+1.2
1,222,455	+		Psest_1126	0.31	+0.8
1,222,457	+		Psest_1126	0.32	+0.1
1,222,457	+		Psest_1126	0.32	+1.1
1,222,457	+		Psest_1126	0.32	+0.1
1,222,457	+		Psest_1126	0.32	-0.8
1,222,457	+		Psest_1126	0.32	-0.2
1,222,457	+		Psest_1126	0.32	-0.5
1,222,457	+		Psest_1126	0.32	+0.5
1,222,457	+		Psest_1126	0.32	+1.5
1,222,457	+		Psest_1126	0.32	+0.1
1,222,457	+		Psest_1126	0.32	-1.4
1,222,458	-		Psest_1126	0.33	+0.2
1,222,458	-		Psest_1126	0.33	+1.2
1,222,458	-		Psest_1126	0.33	-0.7
1,222,458	-		Psest_1126	0.33	-0.3
1,222,458	-		Psest_1126	0.33	-0.2
1,222,458	-		Psest_1126	0.33	+1.0
1,222,458	-		Psest_1126	0.33	+0.7
1,222,458	-		Psest_1126	0.33	+0.8
1,222,458	-		Psest_1126	0.33	+0.7
1,222,458	-		Psest_1126	0.33	-0.1
1,222,458	-		Psest_1126	0.33	-0.4
1,222,458	-		Psest_1126	0.33	-1.1
1,222,610	+				-0.1
1,222,631	+				-0.3
1,222,631	+				+0.8
1,222,631	+				-0.2
1,222,631	+				+0.1
1,222,631	+				+0.7
1,222,632	-				-0.2
1,222,632	-				-0.2
1,222,632	-				+0.2
1,222,678	-				-0.0
1,222,700	+				-1.7
1,222,714	-				-0.6
1,222,714	-				-0.6
1,222,861	+		Psest_1127	0.29	-0.0
1,222,861	+		Psest_1127	0.29	-0.4
1,222,861	+		Psest_1127	0.29	+0.9
1,222,862	-		Psest_1127	0.29	-1.3
1,222,862	-		Psest_1127	0.29	+1.3
1,222,862	-		Psest_1127	0.29	+0.0
1,222,862	-		Psest_1127	0.29	+1.4
1,222,877	-		Psest_1127	0.32	-2.1
1,222,895	+		Psest_1127	0.36	+0.2
1,222,895	+		Psest_1127	0.36	+0.0
1,222,895	+		Psest_1127	0.36	-0.4
1,222,895	+		Psest_1127	0.36	+0.8
1,222,896	-		Psest_1127	0.36	-0.2
1,222,896	-		Psest_1127	0.36	+0.6
1,222,915	+		Psest_1127	0.40	+0.7
1,223,019	+		Psest_1127	0.63	-0.1
1,223,020	-		Psest_1127	0.63	-1.5
1,223,020	-		Psest_1127	0.63	-0.6
1,223,043	+		Psest_1127	0.68	+0.4
1,223,155	-				+0.1
1,223,155	-				-0.2