Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0099 and Psest_0100 are separated by 48 nucleotides Psest_0100 and Psest_0101 are separated by 275 nucleotides
Psest_0099: Psest_0099 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 98,253 to 99,257
_0099
Psest_0100: Psest_0100 - phosphonate ABC transporter, ATP-binding protein, at 99,306 to 100,136
_0100
Psest_0101: Psest_0101 - Short-chain alcohol dehydrogenase of unknown specificity, at 100,412 to 101,176
_0101
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.506 kb on + strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.914 kb on + strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 99.042 kb on + strand, within Psest_0099 at 99.392 kb on - strand, within Psest_0100 at 99.481 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.868 kb on + strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 100.185 kb on - strand at 100.196 kb on + strand at 100.196 kb on + strand at 100.221 kb on + strand at 100.221 kb on + strand at 100.336 kb on + strand at 100.428 kb on + strand at 100.428 kb on + strand at 100.428 kb on + strand at 100.429 kb on - strand at 100.429 kb on - strand at 100.429 kb on - strand at 100.868 kb on + strand, within Psest_0101 at 100.907 kb on - strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 98,506 + Psest_0099 0.25 +0.2 98,507 - Psest_0099 0.25 +0.2 98,507 - Psest_0099 0.25 -0.9 98,782 + Psest_0099 0.53 -0.4 98,782 + Psest_0099 0.53 +0.2 98,782 + Psest_0099 0.53 -2.2 98,782 + Psest_0099 0.53 +2.2 98,782 + Psest_0099 0.53 -0.4 98,782 + Psest_0099 0.53 -0.8 98,783 - Psest_0099 0.53 -0.2 98,783 - Psest_0099 0.53 -0.1 98,783 - Psest_0099 0.53 -0.4 98,783 - Psest_0099 0.53 -0.9 98,783 - Psest_0099 0.53 -1.8 98,783 - Psest_0099 0.53 -0.1 98,783 - Psest_0099 0.53 +0.6 98,911 + Psest_0099 0.65 +1.2 98,911 + Psest_0099 0.65 +0.2 98,911 + Psest_0099 0.65 +0.8 98,911 + Psest_0099 0.65 +3.2 98,912 - Psest_0099 0.66 +0.2 98,912 - Psest_0099 0.66 +1.2 98,912 - Psest_0099 0.66 -0.9 98,912 - Psest_0099 0.66 -1.0 98,914 + Psest_0099 0.66 -0.8 98,915 - Psest_0099 0.66 -0.8 98,915 - Psest_0099 0.66 -0.1 99,042 + Psest_0099 0.79 +0.6 99,392 - Psest_0100 0.10 +0.2 99,481 + Psest_0100 0.21 +0.2 99,493 + Psest_0100 0.23 -1.4 99,493 + Psest_0100 0.23 -0.4 99,868 + Psest_0100 0.68 +0.2 99,869 - Psest_0100 0.68 +1.2 99,869 - Psest_0100 0.68 +0.2 99,894 + Psest_0100 0.71 +1.2 99,894 + Psest_0100 0.71 -1.2 99,894 + Psest_0100 0.71 -0.1 99,894 + Psest_0100 0.71 +1.2 99,895 - Psest_0100 0.71 -0.4 99,895 - Psest_0100 0.71 -0.4 99,895 - Psest_0100 0.71 +1.2 100,185 - -1.1 100,196 + -0.1 100,196 + +1.2 100,221 + +0.2 100,221 + +1.2 100,336 + -0.8 100,428 + +1.2 100,428 + +0.6 100,428 + +1.2 100,429 - +0.6 100,429 - -0.4 100,429 - +1.2 100,868 + Psest_0101 0.60 +1.4 100,907 - Psest_0101 0.65 -0.4 101,078 + Psest_0101 0.87 -0.1 101,078 + Psest_0101 0.87 +1.6 101,078 + Psest_0101 0.87 +0.1 101,078 + Psest_0101 0.87 +1.2 101,078 + Psest_0101 0.87 -1.2 101,079 - Psest_0101 0.87 -0.4 101,079 - Psest_0101 0.87 +1.2 101,079 - Psest_0101 0.87 -0.8
Or see this region's nucleotide sequence