Strain Fitness in Shewanella amazonensis SB2B around Sama_0175

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0172 and Sama_0173 are separated by 12 nucleotidesSama_0173 and Sama_0174 are separated by 22 nucleotidesSama_0174 and Sama_0175 overlap by 20 nucleotidesSama_0175 and Sama_0176 overlap by 1 nucleotides Sama_0172: Sama_0172 - general secretion pathway protein G (RefSeq), at 203,196 to 203,627 _0172 Sama_0173: Sama_0173 - general secretion pathway protein H (RefSeq), at 203,640 to 204,209 _0173 Sama_0174: Sama_0174 - general secretion pathway protein I (RefSeq), at 204,232 to 204,597 _0174 Sama_0175: Sama_0175 - general secretion pathway protein J (RefSeq), at 204,578 to 205,357 _0175 Sama_0176: Sama_0176 - general secretion pathway protein K (RefSeq), at 205,357 to 206,331 _0176 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 203.594 kb on + strandat 203.620 kb on - strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.626 kb on - strandat 203.665 kb on + strandat 203.687 kb on - strandat 203.849 kb on + strand, within Sama_0173at 203.850 kb on - strand, within Sama_0173at 203.853 kb on + strand, within Sama_0173at 203.854 kb on - strand, within Sama_0173at 203.859 kb on + strand, within Sama_0173at 203.860 kb on - strand, within Sama_0173at 203.868 kb on + strand, within Sama_0173at 203.942 kb on + strand, within Sama_0173at 204.015 kb on - strand, within Sama_0173at 204.070 kb on + strand, within Sama_0173at 204.208 kb on - strandat 204.316 kb on - strand, within Sama_0174at 204.462 kb on + strand, within Sama_0174at 204.504 kb on + strand, within Sama_0174at 204.547 kb on + strand, within Sama_0174at 204.578 kb on - strandat 204.585 kb on + strandat 204.595 kb on + strandat 204.980 kb on + strand, within Sama_0175at 205.078 kb on + strand, within Sama_0175at 205.079 kb on - strand, within Sama_0175at 205.079 kb on - strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175at 205.216 kb on + strand, within Sama_0175at 205.216 kb on + strand, within Sama_0175at 205.395 kb on - strandat 205.651 kb on - strand, within Sama_0176at 205.864 kb on + strand, within Sama_0176at 205.975 kb on + strand, within Sama_0176at 205.975 kb on + strand, within Sama_0176at 205.975 kb on + strand, within Sama_0176at 205.975 kb on + strand, within Sama_0176at 205.976 kb on - strand, within Sama_0176at 206.176 kb on - strand, within Sama_0176at 206.293 kb on - strandat 206.314 kb on + strandat 206.314 kb on + strandat 206.315 kb on - strandat 206.342 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.349 kb on + strandat 206.355 kb on + strandat 206.355 kb on + strandat 206.355 kb on + strandat 206.355 kb on + strandat 206.355 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
203,594 + -1.1
203,620 - -0.5
203,625 + +0.3
203,625 + +1.1
203,625 + +0.8
203,626 - +0.5
203,665 + -0.8
203,687 - -1.1
203,849 + Sama_0173 0.37 -1.3
203,850 - Sama_0173 0.37 +0.9
203,853 + Sama_0173 0.37 -0.5
203,854 - Sama_0173 0.38 +0.5
203,859 + Sama_0173 0.38 +0.5
203,860 - Sama_0173 0.39 -0.8
203,868 + Sama_0173 0.40 +0.5
203,942 + Sama_0173 0.53 -1.1
204,015 - Sama_0173 0.66 -0.1
204,070 + Sama_0173 0.75 -1.1
204,208 - -0.8
204,316 - Sama_0174 0.23 -1.7
204,462 + Sama_0174 0.63 +0.5
204,504 + Sama_0174 0.74 +1.3
204,547 + Sama_0174 0.86 +1.5
204,578 - -0.8
204,585 + -0.0
204,595 + +1.3
204,980 + Sama_0175 0.52 -0.1
205,078 + Sama_0175 0.64 -1.5
205,079 - Sama_0175 0.64 -0.5
205,079 - Sama_0175 0.64 -0.1
205,189 + Sama_0175 0.78 +0.8
205,189 + Sama_0175 0.78 -2.8
205,189 + Sama_0175 0.78 +0.8
205,189 + Sama_0175 0.78 -1.1
205,189 + Sama_0175 0.78 -0.1
205,189 + Sama_0175 0.78 -0.5
205,189 + Sama_0175 0.78 +0.2
205,190 - Sama_0175 0.78 -0.3
205,190 - Sama_0175 0.78 -1.5
205,190 - Sama_0175 0.78 -2.7
205,216 + Sama_0175 0.82 +2.1
205,216 + Sama_0175 0.82 -0.5
205,395 - -0.5
205,651 - Sama_0176 0.30 -1.1
205,864 + Sama_0176 0.52 -0.5
205,975 + Sama_0176 0.63 -1.1
205,975 + Sama_0176 0.63 -0.5
205,975 + Sama_0176 0.63 -1.3
205,975 + Sama_0176 0.63 -0.1
205,976 - Sama_0176 0.63 +2.1
206,176 - Sama_0176 0.84 -1.5
206,293 - -0.1
206,314 + -0.6
206,314 + +0.2
206,315 - +1.1
206,342 + -0.4
206,349 + -1.3
206,349 + +0.6
206,349 + -0.2
206,349 + -0.3
206,349 + -1.4
206,349 + -0.4
206,349 + -0.9
206,355 + +0.1
206,355 + -0.8
206,355 + -1.1
206,355 + -0.3
206,355 + +0.5

Or see this region's nucleotide sequence