Strain Fitness in Shewanella amazonensis SB2B around Sama_3054

Experiment: Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 5 vol%
3,629,467	+		Sama_3052	0.20	+1.8
3,629,468	-		Sama_3052	0.21	-1.7
3,629,468	-		Sama_3052	0.21	+0.5
3,629,468	-		Sama_3052	0.21	-0.5
3,629,468	-		Sama_3052	0.21	-1.0
3,629,537	-		Sama_3052	0.30	+1.6
3,629,568	+		Sama_3052	0.34	-1.3
3,629,586	-		Sama_3052	0.36	-1.1
3,629,586	-		Sama_3052	0.36	-0.3
3,629,627	+		Sama_3052	0.42	-0.3
3,629,636	+		Sama_3052	0.43	-0.3
3,629,636	+		Sama_3052	0.43	+0.3
3,629,636	+		Sama_3052	0.43	-0.6
3,629,637	-		Sama_3052	0.43	-0.5
3,629,637	-		Sama_3052	0.43	-0.8
3,629,641	+		Sama_3052	0.44	-0.8
3,629,641	+		Sama_3052	0.44	+0.8
3,629,641	+		Sama_3052	0.44	-0.0
3,629,642	-		Sama_3052	0.44	+0.3
3,629,642	-		Sama_3052	0.44	+0.2
3,629,642	-		Sama_3052	0.44	+0.7
3,629,642	-		Sama_3052	0.44	-0.4
3,629,664	+		Sama_3052	0.47	+0.7
3,629,665	-		Sama_3052	0.47	+1.9
3,629,735	+		Sama_3052	0.57	-0.0
3,629,736	-		Sama_3052	0.57	+0.4
3,629,736	-		Sama_3052	0.57	-0.4
3,629,736	-		Sama_3052	0.57	+0.2
3,629,744	-		Sama_3052	0.58	+1.0
3,629,782	+		Sama_3052	0.63	+0.3
3,629,783	-		Sama_3052	0.63	+0.2
3,629,783	-		Sama_3052	0.63	+0.2
3,629,783	-		Sama_3052	0.63	-0.4
3,629,783	-		Sama_3052	0.63	-0.1
3,629,824	+		Sama_3052	0.69	+0.0
3,629,825	-		Sama_3052	0.69	-0.3
3,629,825	-		Sama_3052	0.69	-1.1
3,629,825	-		Sama_3052	0.69	-0.2
3,629,831	+		Sama_3052	0.70	-0.2
3,629,831	+		Sama_3052	0.70	+0.7
3,629,832	-		Sama_3052	0.70	-0.8
3,629,832	-		Sama_3052	0.70	-1.7
3,629,889	-		Sama_3052	0.77	+0.7
3,629,935	+		Sama_3052	0.84	-0.1
3,629,936	-		Sama_3052	0.84	-0.3
3,629,936	-		Sama_3052	0.84	+0.5
3,629,936	-		Sama_3052	0.84	+0.3
3,629,936	-		Sama_3052	0.84	+0.6
3,629,936	-		Sama_3052	0.84	+0.4
3,630,005	-				-1.3
3,630,045	-				-0.5
3,630,045	-				-0.9
3,630,091	-				-1.0
3,630,091	-				-0.5
3,630,097	-				-0.9
3,630,123	+				+1.5
3,630,146	-				+0.9
3,630,153	-		Sama_3053	0.11	-0.1
3,630,171	+		Sama_3053	0.20	-0.7
3,630,197	-		Sama_3053	0.33	-0.6
3,630,197	-		Sama_3053	0.33	+0.5
3,630,301	+		Sama_3053	0.86	-1.3
3,630,301	+		Sama_3053	0.86	-1.5
3,630,301	+		Sama_3053	0.86	+0.3
3,630,302	-		Sama_3053	0.86	-0.3
3,630,317	-				+0.7
3,630,323	-				-0.7
3,630,323	-				-0.5
3,630,323	-				-0.5
3,630,349	+				-0.7
3,630,373	+				-0.0
3,630,373	+				-0.2
3,630,374	-				+0.1
3,630,386	+				-0.2
3,630,386	+				+0.0
3,630,387	-				-0.3
3,630,387	-				+0.1
3,630,412	-				+0.1
3,630,420	+				-0.4
3,630,420	+				-0.8
3,630,420	+				-0.4
3,630,421	-				+1.3
3,630,466	+				-0.0
3,630,466	+				+0.3
3,630,467	-				-0.2
3,630,560	+		Sama_3054	0.35	+0.5
3,630,561	-		Sama_3054	0.36	-1.1
3,630,642	+		Sama_3054	0.66	-0.8
3,630,643	-		Sama_3054	0.66	+0.0
3,630,643	-		Sama_3054	0.66	+0.5
3,630,650	+		Sama_3054	0.69	+0.0
3,630,650	+		Sama_3054	0.69	-0.4
3,630,650	+		Sama_3054	0.69	-0.4
3,630,650	+		Sama_3054	0.69	+1.1
3,630,650	+		Sama_3054	0.69	-0.2
3,630,651	-		Sama_3054	0.69	+0.3
3,630,651	-		Sama_3054	0.69	+0.7
3,630,651	-		Sama_3054	0.69	-0.9
3,630,651	-		Sama_3054	0.69	-0.4
3,630,696	-		Sama_3054	0.86	-0.5
3,630,758	+				+0.1
3,630,758	+				-0.3
3,630,759	-				+0.7
3,630,759	-				-0.3
3,630,759	-				-0.0
3,630,772	+				+1.5
3,630,775	+				+0.1
3,630,776	-				+1.1
3,630,776	-				+0.1
3,630,776	-				+0.7
3,630,821	-				+0.3
3,630,895	-				+0.0
3,630,941	+				+0.8
3,630,941	+				-1.9
3,630,941	+				-0.4
3,630,942	-				-0.2
3,630,951	+				-1.9
3,630,952	-				-0.2
3,630,968	-				-0.1
3,630,968	-				-0.7
3,630,987	-				-0.3
3,631,061	+		Sama_3055	0.12	+1.0
3,631,062	-		Sama_3055	0.12	-0.5
3,631,062	-		Sama_3055	0.12	-1.2
3,631,062	-		Sama_3055	0.12	+0.2
3,631,086	+		Sama_3055	0.15	-0.6
3,631,086	+		Sama_3055	0.15	-0.1
3,631,087	-		Sama_3055	0.15	-0.4
3,631,087	-		Sama_3055	0.15	+0.3
3,631,087	-		Sama_3055	0.15	+1.0
3,631,087	-		Sama_3055	0.15	-0.7
3,631,126	-		Sama_3055	0.19	-0.4
3,631,126	-		Sama_3055	0.19	-0.1
3,631,127	+		Sama_3055	0.19	-0.5
3,631,127	+		Sama_3055	0.19	-0.2
3,631,127	+		Sama_3055	0.19	-0.2
3,631,127	+		Sama_3055	0.19	+0.8
3,631,127	+		Sama_3055	0.19	-1.3
3,631,128	-		Sama_3055	0.19	+0.7
3,631,128	-		Sama_3055	0.19	+0.6
3,631,128	-		Sama_3055	0.19	-0.1
3,631,128	-		Sama_3055	0.19	+0.5
3,631,128	-		Sama_3055	0.19	+1.0
3,631,128	-		Sama_3055	0.19	+0.5
3,631,128	-		Sama_3055	0.19	+2.2
3,631,128	-		Sama_3055	0.19	-0.0
3,631,128	-		Sama_3055	0.19	-1.1
3,631,128	-		Sama_3055	0.19	+0.5
3,631,128	-		Sama_3055	0.19	-1.1
3,631,165	+		Sama_3055	0.23	+0.2
3,631,165	+		Sama_3055	0.23	+0.1
3,631,165	+		Sama_3055	0.23	+0.1
3,631,165	+		Sama_3055	0.23	+0.2
3,631,166	-		Sama_3055	0.23	+1.5
3,631,166	-		Sama_3055	0.23	-0.2
3,631,166	-		Sama_3055	0.23	+1.1
3,631,166	-		Sama_3055	0.23	-0.6
3,631,166	-		Sama_3055	0.23	-0.9
3,631,166	-		Sama_3055	0.23	+0.1
3,631,166	-		Sama_3055	0.23	-2.7
3,631,166	-		Sama_3055	0.23	+0.8
3,631,166	-		Sama_3055	0.23	+0.3
3,631,166	-		Sama_3055	0.23	+0.8
3,631,208	-		Sama_3055	0.27	-0.6
3,631,212	+		Sama_3055	0.28	-0.6
3,631,212	+		Sama_3055	0.28	+0.2
3,631,213	-		Sama_3055	0.28	+0.6
3,631,213	-		Sama_3055	0.28	-0.7
3,631,213	-		Sama_3055	0.28	+0.4
3,631,215	-		Sama_3055	0.28	+0.3
3,631,215	-		Sama_3055	0.28	-1.8
3,631,275	+		Sama_3055	0.34	+0.3
3,631,276	-		Sama_3055	0.34	-0.7
3,631,285	+		Sama_3055	0.35	-0.2
3,631,285	+		Sama_3055	0.35	+1.0
3,631,285	+		Sama_3055	0.35	+0.3
3,631,286	-		Sama_3055	0.35	+0.7
3,631,286	-		Sama_3055	0.35	+0.2
3,631,286	-		Sama_3055	0.35	+0.2
3,631,286	-		Sama_3055	0.35	+0.2
3,631,286	-		Sama_3055	0.35	+1.5
3,631,286	-		Sama_3055	0.35	+0.6
3,631,286	-		Sama_3055	0.35	-0.6
3,631,287	+		Sama_3055	0.35	+0.9
3,631,287	+		Sama_3055	0.35	-1.0
3,631,287	+		Sama_3055	0.35	+0.5
3,631,287	+		Sama_3055	0.35	-0.2
3,631,287	+		Sama_3055	0.35	-0.2
3,631,287	+		Sama_3055	0.35	-1.3
3,631,287	+		Sama_3055	0.35	-0.1
3,631,287	+		Sama_3055	0.35	-1.9
3,631,287	+		Sama_3055	0.35	-0.6
3,631,287	+		Sama_3055	0.35	+0.6
3,631,287	+		Sama_3055	0.35	+0.4
3,631,287	+		Sama_3055	0.35	-1.5
3,631,287	+		Sama_3055	0.35	+0.1
3,631,287	+		Sama_3055	0.35	-0.2
3,631,287	+		Sama_3055	0.35	+0.5
3,631,287	+		Sama_3055	0.35	-0.3
3,631,287	+		Sama_3055	0.35	-0.4
3,631,287	+		Sama_3055	0.35	-1.5
3,631,287	+		Sama_3055	0.35	+0.9
3,631,287	+		Sama_3055	0.35	+0.1
3,631,288	-		Sama_3055	0.35	-0.9
3,631,288	-		Sama_3055	0.35	+0.0
3,631,288	-		Sama_3055	0.35	-0.1
3,631,288	-		Sama_3055	0.35	+0.2
3,631,288	-		Sama_3055	0.35	-0.1
3,631,288	-		Sama_3055	0.35	-0.8
3,631,288	-		Sama_3055	0.35	-0.1
3,631,288	-		Sama_3055	0.35	-1.0
3,631,288	-		Sama_3055	0.35	+0.0
3,631,288	-		Sama_3055	0.35	+2.0
3,631,288	-		Sama_3055	0.35	-1.1
3,631,288	-		Sama_3055	0.35	-0.2
3,631,288	-		Sama_3055	0.35	+0.4
3,631,288	-		Sama_3055	0.35	+0.6
3,631,288	-		Sama_3055	0.35	+0.7
3,631,288	-		Sama_3055	0.35	-1.7
3,631,288	-		Sama_3055	0.35	-0.3
3,631,288	-		Sama_3055	0.35	-0.2
3,631,288	-		Sama_3055	0.35	+0.6
3,631,308	+		Sama_3055	0.38	+0.1
3,631,308	+		Sama_3055	0.38	-0.9
3,631,308	+		Sama_3055	0.38	-0.0
3,631,309	-		Sama_3055	0.38	+0.1
3,631,309	-		Sama_3055	0.38	+1.6
3,631,309	-		Sama_3055	0.38	-0.2
3,631,309	-		Sama_3055	0.38	-0.5
3,631,309	-		Sama_3055	0.38	+1.8
3,631,309	-		Sama_3055	0.38	-0.1
3,631,309	-		Sama_3055	0.38	+1.2
3,631,328	+		Sama_3055	0.40	+0.1
3,631,346	+		Sama_3055	0.41	-0.5
3,631,347	-		Sama_3055	0.41	+0.0
3,631,347	-		Sama_3055	0.41	+0.1
3,631,347	-		Sama_3055	0.41	+0.4
3,631,428	+		Sama_3055	0.50	+0.6
3,631,428	+		Sama_3055	0.50	+1.2
3,631,428	+		Sama_3055	0.50	+0.9
3,631,429	-		Sama_3055	0.50	-0.0
3,631,429	-		Sama_3055	0.50	+0.4
3,631,431	+		Sama_3055	0.50	+0.7
3,631,432	-		Sama_3055	0.50	-0.5
3,631,432	-		Sama_3055	0.50	-0.8
3,631,432	-		Sama_3055	0.50	+1.3
3,631,432	-		Sama_3055	0.50	-0.1
3,631,437	+		Sama_3055	0.51	+0.3
3,631,487	+		Sama_3055	0.56	+0.1
3,631,487	+		Sama_3055	0.56	-1.9
3,631,488	-		Sama_3055	0.56	-0.6
3,631,520	+		Sama_3055	0.59	+0.1
3,631,534	+		Sama_3055	0.61	-0.6
3,631,534	+		Sama_3055	0.61	+1.5
3,631,535	-		Sama_3055	0.61	-1.2
3,631,535	-		Sama_3055	0.61	-0.4
3,631,535	-		Sama_3055	0.61	+0.1
3,631,555	-		Sama_3055	0.63	-0.1
3,631,561	+		Sama_3055	0.63	-0.3
3,631,561	+		Sama_3055	0.63	-0.6
3,631,562	-		Sama_3055	0.63	-0.0
3,631,581	+		Sama_3055	0.65	-0.2
3,631,581	+		Sama_3055	0.65	-1.2
3,631,582	-		Sama_3055	0.65	+1.1
3,631,622	-		Sama_3055	0.70	+1.2
3,631,642	+		Sama_3055	0.72	+0.7
3,631,642	+		Sama_3055	0.72	-0.1
3,631,642	+		Sama_3055	0.72	+0.1
3,631,642	+		Sama_3055	0.72	-0.3
3,631,643	-		Sama_3055	0.72	+0.9
3,631,643	-		Sama_3055	0.72	-0.3
3,631,643	-		Sama_3055	0.72	+1.1
3,631,643	-		Sama_3055	0.72	+0.2
3,631,643	-		Sama_3055	0.72	-1.7
3,631,643	-		Sama_3055	0.72	-0.2
3,631,643	-		Sama_3055	0.72	+0.6
3,631,651	-		Sama_3055	0.72	-0.4
3,631,664	+		Sama_3055	0.74	+0.9