Strain Fitness in Shewanella amazonensis SB2B around Sama_2188

Experiment: Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 5 vol%
2,646,332	+				-1.3
2,646,351	+				-1.6
2,646,352	-				-0.4
2,646,353	+				-0.2
2,646,354	-				-0.2
2,646,368	-		Sama_2187	0.10	-1.7
2,646,479	-		Sama_2187	0.22	+0.9
2,646,479	-		Sama_2187	0.22	+0.2
2,646,479	-		Sama_2187	0.22	-0.4
2,646,482	-		Sama_2187	0.23	+0.3
2,646,482	-		Sama_2187	0.23	+1.2
2,646,482	-		Sama_2187	0.23	-0.8
2,646,535	+		Sama_2187	0.29	-0.3
2,646,535	+		Sama_2187	0.29	+0.1
2,646,536	-		Sama_2187	0.29	-0.0
2,646,536	-		Sama_2187	0.29	-0.2
2,646,693	-		Sama_2187	0.46	-0.1
2,646,854	-		Sama_2187	0.63	+0.3
2,646,854	-		Sama_2187	0.63	+0.8
2,646,854	-		Sama_2187	0.63	+1.3
2,646,854	-		Sama_2187	0.63	+0.7
2,646,864	+		Sama_2187	0.65	-1.1
2,646,865	-		Sama_2187	0.65	-0.4
2,646,865	-		Sama_2187	0.65	+0.5
2,646,957	+		Sama_2187	0.75	-0.9
2,646,979	+		Sama_2187	0.77	-0.0
2,646,980	-		Sama_2187	0.77	+0.7
2,646,980	-		Sama_2187	0.77	-0.4
2,646,980	-		Sama_2187	0.77	-0.0
2,647,013	-		Sama_2187	0.81	+0.2
2,647,238	+		Sama_2188	0.12	-1.0
2,647,239	-		Sama_2188	0.12	-0.3
2,647,239	-		Sama_2188	0.12	-0.5
2,647,239	-		Sama_2188	0.12	+0.4
2,647,268	+		Sama_2188	0.20	-1.7
2,647,288	-		Sama_2188	0.26	+0.5
2,647,289	+		Sama_2188	0.26	-1.3
2,647,290	-		Sama_2188	0.26	-0.0
2,647,310	+		Sama_2188	0.32	+1.0
2,647,325	+		Sama_2188	0.36	+1.0
2,647,326	-		Sama_2188	0.36	-0.8
2,647,479	-		Sama_2188	0.79	-0.9
2,647,513	+		Sama_2188	0.88	-0.3
2,647,546	-				+0.2
2,647,546	-				-0.0
2,647,566	+				+0.2
2,647,567	-				+1.0
2,647,590	+				+0.2
2,647,590	+				-0.8
2,647,590	+				-0.4
2,647,591	-				+0.8
2,647,591	-				+0.2
2,647,591	-				-0.4
2,647,591	-				-0.6
2,647,591	-				-1.1
2,647,596	+				-1.8
2,647,597	-				+1.1
2,647,828	-		Sama_2189	0.62	-0.3
2,647,869	-		Sama_2189	0.75	+1.3
2,647,869	-		Sama_2189	0.75	-0.1
2,647,937	+				+0.6
2,647,938	-				+0.1
2,647,961	-				+0.2
2,647,961	-				+1.0
2,647,966	+				-0.2
2,647,966	+				+0.3
2,647,966	+				-1.8
2,647,966	+				-0.3
2,647,966	+				+0.2
2,647,966	+				-1.9
2,647,966	+				-0.3
2,647,967	-				+0.5
2,647,967	-				+0.7
2,647,967	-				+1.0
2,647,967	-				-0.3
2,647,967	-				+1.3
2,647,984	+				+0.1
2,647,984	+				+0.2
2,647,984	+				+0.7
2,647,985	-				-0.1
2,647,985	-				+0.1
2,647,985	-				+0.0
2,647,986	+				-1.2
2,647,986	+				-0.2
2,647,986	+				-0.4
2,647,986	+				+1.0
2,647,986	+				-0.6
2,647,987	-				+0.1
2,647,987	-				+0.3
2,648,015	-				+0.3
2,648,087	-				+0.3
2,648,134	-				-0.5
2,648,143	-				-1.3
2,648,143	-				-0.5
2,648,151	+				+0.7
2,648,151	+				-0.7
2,648,152	-				+0.5
2,648,152	-				-0.3
2,648,254	-	secF	Sama_2190	0.11	+1.0
2,648,254	-	secF	Sama_2190	0.11	-0.3
2,648,266	-	secF	Sama_2190	0.12	+0.5
2,648,266	-	secF	Sama_2190	0.12	+0.4
2,648,381	-	secF	Sama_2190	0.24	+0.8
2,648,480	-	secF	Sama_2190	0.35	+0.5
2,648,480	-	secF	Sama_2190	0.35	+1.0