Strain Fitness in Shewanella amazonensis SB2B around Sama_1894

Experiment: Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 5 vol%
2,308,911	+		Sama_1893	0.19	-0.2
2,308,911	+		Sama_1893	0.19	+0.2
2,308,912	-		Sama_1893	0.20	-0.7
2,308,912	-		Sama_1893	0.20	+0.3
2,308,928	+		Sama_1893	0.21	-3.2
2,308,928	+		Sama_1893	0.21	+0.3
2,308,929	-		Sama_1893	0.21	+1.1
2,308,929	-		Sama_1893	0.21	+0.9
2,308,970	+		Sama_1893	0.25	-0.9
2,308,970	+		Sama_1893	0.25	+0.9
2,308,998	+		Sama_1893	0.28	+0.3
2,308,999	-		Sama_1893	0.28	+0.5
2,309,070	+		Sama_1893	0.35	-0.1
2,309,071	-		Sama_1893	0.35	-0.0
2,309,110	+		Sama_1893	0.39	+0.1
2,309,111	-		Sama_1893	0.39	-0.6
2,309,111	-		Sama_1893	0.39	-0.6
2,309,111	-		Sama_1893	0.39	+0.1
2,309,137	+		Sama_1893	0.42	-0.8
2,309,137	+		Sama_1893	0.42	-0.2
2,309,138	-		Sama_1893	0.42	+0.3
2,309,138	-		Sama_1893	0.42	+0.1
2,309,138	-		Sama_1893	0.42	-0.6
2,309,138	-		Sama_1893	0.42	-0.5
2,309,138	-		Sama_1893	0.42	-0.2
2,309,138	-		Sama_1893	0.42	-0.3
2,309,138	-		Sama_1893	0.42	-0.9
2,309,138	-		Sama_1893	0.42	-0.2
2,309,138	-		Sama_1893	0.42	-0.7
2,309,138	-		Sama_1893	0.42	-0.6
2,309,211	+		Sama_1893	0.49	+1.1
2,309,297	-		Sama_1893	0.58	-0.3
2,309,297	-		Sama_1893	0.58	-0.4
2,309,300	+		Sama_1893	0.58	+1.9
2,309,300	+		Sama_1893	0.58	+0.1
2,309,301	-		Sama_1893	0.58	+0.4
2,309,301	-		Sama_1893	0.58	-0.4
2,309,301	-		Sama_1893	0.58	+0.2
2,309,301	-		Sama_1893	0.58	+0.5
2,309,301	-		Sama_1893	0.58	+0.3
2,309,338	+		Sama_1893	0.62	+0.3
2,309,338	+		Sama_1893	0.62	-0.1
2,309,339	-		Sama_1893	0.62	+1.7
2,309,358	-		Sama_1893	0.64	-0.7
2,309,361	+		Sama_1893	0.64	+0.1
2,309,361	+		Sama_1893	0.64	+0.7
2,309,361	+		Sama_1893	0.64	+0.3
2,309,362	-		Sama_1893	0.64	+1.4
2,309,466	+		Sama_1893	0.75	+0.8
2,309,466	+		Sama_1893	0.75	+1.1
2,309,466	+		Sama_1893	0.75	+1.2
2,309,467	-		Sama_1893	0.75	-0.4
2,309,467	-		Sama_1893	0.75	-0.2
2,309,583	+		Sama_1893	0.86	+1.9
2,309,583	+		Sama_1893	0.86	+0.9
2,309,583	+		Sama_1893	0.86	-0.4
2,309,583	+		Sama_1893	0.86	+0.7
2,309,584	-		Sama_1893	0.86	-0.1
2,309,585	+		Sama_1893	0.86	-1.4
2,309,586	-		Sama_1893	0.87	+0.7
2,309,644	-				-0.5
2,309,644	-				-0.8
2,309,737	+				+0.6
2,309,738	-				-0.3
2,309,738	-				+0.8
2,309,738	-				-0.6
2,309,747	+				+1.2
2,309,769	-				-0.1
2,309,783	+				+0.2
2,309,784	-				+0.2
2,309,784	-				-0.0
2,309,804	-				+0.5
2,309,806	+				-0.6
2,309,834	+				+0.9
2,309,844	-				+0.7
2,309,907	-				+0.9
2,309,907	-				-0.1
2,310,171	+		Sama_1894	0.17	+0.3
2,310,236	+		Sama_1894	0.21	+0.3
2,310,237	-		Sama_1894	0.21	+2.2
2,310,429	-		Sama_1894	0.33	+1.7
2,310,429	-		Sama_1894	0.33	+1.6
2,310,770	-		Sama_1894	0.55	-0.9
2,310,770	-		Sama_1894	0.55	+0.7
2,310,838	-		Sama_1894	0.59	+0.8
2,310,889	+		Sama_1894	0.63	+0.6
2,310,889	+		Sama_1894	0.63	+0.9
2,310,889	+		Sama_1894	0.63	+0.5
2,310,889	+		Sama_1894	0.63	+0.7
2,310,890	-		Sama_1894	0.63	-0.0
2,310,933	+		Sama_1894	0.65	+1.1
2,310,933	+		Sama_1894	0.65	-0.6
2,310,934	-		Sama_1894	0.66	-1.3
2,310,934	-		Sama_1894	0.66	+0.9
2,310,966	+		Sama_1894	0.68	+0.4
2,310,966	+		Sama_1894	0.68	-0.1
2,310,966	+		Sama_1894	0.68	-0.2
2,310,967	-		Sama_1894	0.68	+0.2
2,310,980	+		Sama_1894	0.68	-0.5
2,310,980	+		Sama_1894	0.68	+0.4
2,310,981	-		Sama_1894	0.69	+1.2
2,311,055	+		Sama_1894	0.73	+0.7
2,311,055	+		Sama_1894	0.73	-0.6
2,311,055	+		Sama_1894	0.73	+0.3
2,311,056	-		Sama_1894	0.73	-0.1
2,311,056	-		Sama_1894	0.73	+0.9
2,311,056	-		Sama_1894	0.73	+2.1
2,311,056	-		Sama_1894	0.73	+0.7
2,311,056	-		Sama_1894	0.73	-0.4
2,311,058	+		Sama_1894	0.73	-0.7
2,311,058	+		Sama_1894	0.73	-0.1
2,311,059	-		Sama_1894	0.74	-0.1
2,311,059	-		Sama_1894	0.74	+0.0
2,311,173	+		Sama_1894	0.81	-0.3
2,311,187	+		Sama_1894	0.82	+0.4
2,311,191	+		Sama_1894	0.82	+1.7
2,311,191	+		Sama_1894	0.82	-0.3
2,311,192	-		Sama_1894	0.82	+1.3
2,311,213	+		Sama_1894	0.83	+1.4
2,311,213	+		Sama_1894	0.83	+0.3
2,311,213	+		Sama_1894	0.83	+0.7
2,311,213	+		Sama_1894	0.83	+0.7
2,311,213	+		Sama_1894	0.83	+1.2
2,311,213	+		Sama_1894	0.83	+0.3
2,311,213	+		Sama_1894	0.83	-0.1
2,311,214	-		Sama_1894	0.83	+0.9
2,311,289	+		Sama_1894	0.88	-0.7
2,311,342	+				-0.1
2,311,342	+				+0.2
2,311,403	+				+0.6
2,311,404	-				+0.8
2,311,409	-				+0.6
2,311,470	+				-0.4
2,311,470	+				-1.8
2,311,470	+				-0.4
2,311,614	+				+0.6
2,311,617	+				+1.5
2,311,618	-				+0.9
2,311,618	-				+0.5
2,311,628	-				+0.3
2,311,672	+				+1.1
2,311,673	-				-0.1
2,311,755	+		Sama_1895	0.14	+1.3
2,311,765	+		Sama_1895	0.14	+0.9
2,311,876	+		Sama_1895	0.20	-0.6
2,311,879	+		Sama_1895	0.20	-1.0
2,311,880	-		Sama_1895	0.20	+1.7
2,311,984	-		Sama_1895	0.26	-1.1
2,312,034	+		Sama_1895	0.28	+0.5
2,312,034	+		Sama_1895	0.28	+1.2
2,312,035	-		Sama_1895	0.28	-0.4
2,312,035	-		Sama_1895	0.28	+0.6
2,312,077	+		Sama_1895	0.31	-0.5
2,312,101	+		Sama_1895	0.32	+0.5
2,312,170	+		Sama_1895	0.35	+0.6
2,312,170	+		Sama_1895	0.35	+0.2
2,312,170	+		Sama_1895	0.35	+0.6
2,312,170	+		Sama_1895	0.35	+0.0
2,312,170	+		Sama_1895	0.35	+0.1
2,312,170	+		Sama_1895	0.35	-0.3
2,312,171	-		Sama_1895	0.35	+0.2
2,312,171	-		Sama_1895	0.35	+1.3
2,312,171	-		Sama_1895	0.35	+0.3
2,312,197	+		Sama_1895	0.37	+0.3
2,312,240	+		Sama_1895	0.39	+0.1
2,312,269	+		Sama_1895	0.41	+0.2
2,312,297	+		Sama_1895	0.42	+0.9
2,312,297	+		Sama_1895	0.42	+0.1
2,312,298	-		Sama_1895	0.42	+0.8
2,312,323	-		Sama_1895	0.43	+1.5
2,312,339	+		Sama_1895	0.44	+1.5
2,312,339	+		Sama_1895	0.44	+1.2