Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1644 and Sama_1645 are separated by 137 nucleotides Sama_1645 and Sama_1646 overlap by 8 nucleotides Sama_1646 and Sama_1647 are separated by 53 nucleotides
Sama_1644: Sama_1644 - topoisomerase IV, subunit B (RefSeq), at 2,009,514 to 2,010,695
_1644
Sama_1645: Sama_1645 - alpha/beta hydrolase fold (RefSeq), at 2,010,833 to 2,011,660
_1645
Sama_1646: Sama_1646 - D-alanyl-D-alanine carboxypeptidase-related protein (RefSeq), at 2,011,653 to 2,012,291
_1646
Sama_1647: Sama_1647 - succinyl-diaminopimelate desuccinylase (RefSeq), at 2,012,345 to 2,013,493
_1647
Position (kb)
2011
2012
2013 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2010.684 kb on - strand at 2010.684 kb on - strand at 2010.684 kb on - strand at 2010.687 kb on + strand at 2010.688 kb on - strand at 2010.701 kb on - strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.709 kb on + strand at 2010.922 kb on + strand, within Sama_1645 at 2010.922 kb on + strand, within Sama_1645 at 2010.923 kb on - strand, within Sama_1645 at 2010.923 kb on - strand, within Sama_1645 at 2010.963 kb on + strand, within Sama_1645 at 2010.963 kb on + strand, within Sama_1645 at 2010.964 kb on - strand, within Sama_1645 at 2010.975 kb on - strand, within Sama_1645 at 2011.013 kb on + strand, within Sama_1645 at 2011.048 kb on + strand, within Sama_1645 at 2011.097 kb on - strand, within Sama_1645 at 2011.181 kb on + strand, within Sama_1645 at 2011.181 kb on + strand, within Sama_1645 at 2011.181 kb on + strand, within Sama_1645 at 2011.190 kb on + strand, within Sama_1645 at 2011.190 kb on + strand, within Sama_1645 at 2011.190 kb on + strand, within Sama_1645 at 2011.190 kb on + strand, within Sama_1645 at 2011.191 kb on - strand, within Sama_1645 at 2011.191 kb on - strand, within Sama_1645 at 2011.191 kb on - strand, within Sama_1645 at 2011.191 kb on - strand, within Sama_1645 at 2011.191 kb on - strand, within Sama_1645 at 2011.245 kb on + strand, within Sama_1645 at 2011.245 kb on + strand, within Sama_1645 at 2011.355 kb on + strand, within Sama_1645 at 2011.356 kb on - strand, within Sama_1645 at 2011.356 kb on - strand, within Sama_1645 at 2011.441 kb on + strand, within Sama_1645 at 2011.441 kb on + strand, within Sama_1645 at 2011.543 kb on + strand, within Sama_1645 at 2011.557 kb on + strand, within Sama_1645 at 2011.558 kb on - strand, within Sama_1645 at 2011.558 kb on - strand, within Sama_1645 at 2011.608 kb on - strand at 2011.685 kb on + strand at 2011.685 kb on + strand at 2011.715 kb on - strand at 2011.723 kb on - strand, within Sama_1646 at 2011.723 kb on - strand, within Sama_1646 at 2011.751 kb on + strand, within Sama_1646 at 2011.751 kb on + strand, within Sama_1646 at 2011.757 kb on + strand, within Sama_1646 at 2011.766 kb on + strand, within Sama_1646 at 2011.848 kb on - strand, within Sama_1646 at 2011.966 kb on + strand, within Sama_1646 at 2012.079 kb on + strand, within Sama_1646 at 2012.079 kb on + strand, within Sama_1646 at 2012.080 kb on - strand, within Sama_1646 at 2012.080 kb on - strand, within Sama_1646 at 2012.088 kb on + strand, within Sama_1646 at 2012.088 kb on + strand, within Sama_1646 at 2012.091 kb on + strand, within Sama_1646 at 2012.092 kb on - strand, within Sama_1646 at 2012.092 kb on - strand, within Sama_1646 at 2012.092 kb on - strand, within Sama_1646 at 2012.092 kb on - strand, within Sama_1646 at 2012.229 kb on - strand at 2012.336 kb on - strand at 2012.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,010,684 - -0.0 2,010,684 - +0.5 2,010,684 - -0.1 2,010,687 + -0.9 2,010,688 - -0.1 2,010,701 - -0.3 2,010,709 + +0.1 2,010,709 + -1.5 2,010,709 + +0.1 2,010,709 + -0.1 2,010,709 + +0.3 2,010,709 + +0.4 2,010,709 + +0.6 2,010,709 + +0.8 2,010,922 + Sama_1645 0.11 +1.6 2,010,922 + Sama_1645 0.11 -0.5 2,010,923 - Sama_1645 0.11 -0.4 2,010,923 - Sama_1645 0.11 +0.2 2,010,963 + Sama_1645 0.16 +0.3 2,010,963 + Sama_1645 0.16 +0.9 2,010,964 - Sama_1645 0.16 -1.1 2,010,975 - Sama_1645 0.17 -1.7 2,011,013 + Sama_1645 0.22 -1.1 2,011,048 + Sama_1645 0.26 +1.9 2,011,097 - Sama_1645 0.32 -0.3 2,011,181 + Sama_1645 0.42 +0.0 2,011,181 + Sama_1645 0.42 -0.1 2,011,181 + Sama_1645 0.42 -0.4 2,011,190 + Sama_1645 0.43 -0.1 2,011,190 + Sama_1645 0.43 +0.7 2,011,190 + Sama_1645 0.43 -1.1 2,011,190 + Sama_1645 0.43 +0.9 2,011,191 - Sama_1645 0.43 +0.1 2,011,191 - Sama_1645 0.43 +0.7 2,011,191 - Sama_1645 0.43 +0.7 2,011,191 - Sama_1645 0.43 -1.1 2,011,191 - Sama_1645 0.43 -0.4 2,011,245 + Sama_1645 0.50 +0.2 2,011,245 + Sama_1645 0.50 +0.0 2,011,355 + Sama_1645 0.63 +0.4 2,011,356 - Sama_1645 0.63 -1.2 2,011,356 - Sama_1645 0.63 +0.1 2,011,441 + Sama_1645 0.73 +2.2 2,011,441 + Sama_1645 0.73 -1.9 2,011,543 + Sama_1645 0.86 +0.2 2,011,557 + Sama_1645 0.87 -1.7 2,011,558 - Sama_1645 0.88 -0.2 2,011,558 - Sama_1645 0.88 +0.1 2,011,608 - -0.7 2,011,685 + -0.4 2,011,685 + +1.1 2,011,715 - -2.8 2,011,723 - Sama_1646 0.11 -0.9 2,011,723 - Sama_1646 0.11 +0.3 2,011,751 + Sama_1646 0.15 -0.5 2,011,751 + Sama_1646 0.15 +0.9 2,011,757 + Sama_1646 0.16 -0.6 2,011,766 + Sama_1646 0.18 -1.5 2,011,848 - Sama_1646 0.31 -0.9 2,011,966 + Sama_1646 0.49 -1.0 2,012,079 + Sama_1646 0.67 -1.4 2,012,079 + Sama_1646 0.67 -1.1 2,012,080 - Sama_1646 0.67 -2.7 2,012,080 - Sama_1646 0.67 -0.5 2,012,088 + Sama_1646 0.68 +0.3 2,012,088 + Sama_1646 0.68 -0.7 2,012,091 + Sama_1646 0.69 -0.8 2,012,092 - Sama_1646 0.69 -0.1 2,012,092 - Sama_1646 0.69 -1.0 2,012,092 - Sama_1646 0.69 -1.7 2,012,092 - Sama_1646 0.69 -1.1 2,012,229 - -1.1 2,012,336 - -0.8 2,012,336 - -2.7
Or see this region's nucleotide sequence