Strain Fitness in Shewanella amazonensis SB2B around Sama_1573

Experiment: Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 5 vol%
1,916,001	+		Sama_1571	0.37	+0.2
1,916,002	-		Sama_1571	0.37	+2.2
1,916,010	-		Sama_1571	0.38	-0.1
1,916,111	+		Sama_1571	0.50	+0.3
1,916,111	+		Sama_1571	0.50	+0.5
1,916,111	+		Sama_1571	0.50	-0.2
1,916,111	+		Sama_1571	0.50	-0.3
1,916,112	-		Sama_1571	0.51	-0.3
1,916,153	+		Sama_1571	0.56	+1.2
1,916,153	+		Sama_1571	0.56	+0.5
1,916,153	+		Sama_1571	0.56	+0.1
1,916,312	+		Sama_1571	0.76	-0.2
1,916,323	+		Sama_1571	0.77	-0.4
1,916,323	+		Sama_1571	0.77	-0.1
1,916,402	+		Sama_1571	0.87	+0.4
1,916,415	-		Sama_1571	0.89	-0.7
1,916,506	-				-0.2
1,916,510	+				+0.2
1,916,546	+				+0.6
1,916,546	+				-1.1
1,916,546	+				-0.1
1,916,553	-				-0.5
1,916,581	-				+1.1
1,916,606	+				-0.5
1,916,606	+				+1.8
1,916,607	-				-0.1
1,916,617	-				+0.4
1,916,619	+				-1.5
1,916,620	-				-0.0
1,916,620	-				-0.8
1,916,620	-				-0.7
1,916,641	-		Sama_1572	0.10	-1.4
1,916,670	+		Sama_1572	0.18	-1.2
1,916,674	+		Sama_1572	0.19	+3.5
1,916,674	+		Sama_1572	0.19	-0.4
1,916,674	+		Sama_1572	0.19	+0.9
1,916,675	-		Sama_1572	0.19	+0.2
1,916,675	-		Sama_1572	0.19	-1.5
1,916,675	-		Sama_1572	0.19	+0.3
1,916,675	-		Sama_1572	0.19	-1.7
1,916,675	-		Sama_1572	0.19	-0.6
1,916,675	-		Sama_1572	0.19	+0.9
1,916,726	+		Sama_1572	0.34	-0.7
1,916,726	+		Sama_1572	0.34	-1.2
1,916,727	-		Sama_1572	0.34	-0.4
1,916,855	+		Sama_1572	0.69	+0.7
1,916,855	+		Sama_1572	0.69	+0.9
1,916,856	-		Sama_1572	0.70	-0.9
1,916,856	-		Sama_1572	0.70	-0.0
1,916,856	-		Sama_1572	0.70	-0.1
1,916,869	-		Sama_1572	0.73	-0.8
1,916,991	+				+0.7
1,917,057	+		Sama_1573	0.13	-0.7
1,917,058	-		Sama_1573	0.13	-0.1
1,917,059	+		Sama_1573	0.13	-0.4
1,917,060	-		Sama_1573	0.13	-0.8
1,917,064	-		Sama_1573	0.14	-1.5
1,917,064	-		Sama_1573	0.14	+0.1
1,917,081	+		Sama_1573	0.18	-0.1
1,917,081	+		Sama_1573	0.18	-0.7
1,917,092	+		Sama_1573	0.20	-1.1
1,917,092	+		Sama_1573	0.20	-0.1
1,917,093	-		Sama_1573	0.20	-0.8
1,917,162	+		Sama_1573	0.35	+0.7
1,917,163	-		Sama_1573	0.35	-0.6
1,917,163	-		Sama_1573	0.35	+1.3
1,917,214	+		Sama_1573	0.46	-0.5
1,917,242	+		Sama_1573	0.52	-0.9
1,917,243	-		Sama_1573	0.52	+0.9
1,917,310	+		Sama_1573	0.66	-0.4
1,917,367	+		Sama_1573	0.79	-1.2
1,917,460	+				+0.7
1,917,501	+				-0.3
1,917,501	+				-1.7
1,917,501	+				-0.1
1,917,547	+				-1.1
1,917,578	+				+0.5
1,917,579	-				+0.4
1,917,579	-				+0.1
1,917,610	+				+0.4
1,917,610	+				+0.9
1,917,611	-				+1.2
1,917,611	-				+1.7
1,917,612	+				-0.8
1,917,612	+				-0.3
1,917,612	+				-1.1
1,917,612	+				+1.3
1,917,613	-				-0.7
1,917,613	-				+1.5
1,917,613	-				-0.4
1,917,613	-				-0.3
1,917,663	+				-0.8
1,917,664	-				+0.2
1,917,664	-				+0.7
1,917,684	-				+0.7
1,917,684	-				+0.2
1,917,795	+		Sama_1574	0.17	-0.8
1,917,796	-		Sama_1574	0.17	+0.0
1,917,808	+		Sama_1574	0.18	+0.1
1,917,808	+		Sama_1574	0.18	+0.9
1,917,808	+		Sama_1574	0.18	-0.6
1,917,942	+		Sama_1574	0.36	-0.4
1,917,942	+		Sama_1574	0.36	-1.2
1,917,943	-		Sama_1574	0.36	-0.5
1,917,943	-		Sama_1574	0.36	+0.7
1,917,943	-		Sama_1574	0.36	+0.4
1,917,943	-		Sama_1574	0.36	+0.3
1,917,958	+		Sama_1574	0.38	+0.0
1,917,970	+		Sama_1574	0.39	+0.1
1,917,971	-		Sama_1574	0.39	-0.7
1,917,973	+		Sama_1574	0.40	+0.9
1,917,973	+		Sama_1574	0.40	-0.3
1,917,974	-		Sama_1574	0.40	+0.3
1,918,088	-		Sama_1574	0.54	+3.5
1,918,103	+		Sama_1574	0.56	-0.7
1,918,104	-		Sama_1574	0.56	+0.6
1,918,111	+		Sama_1574	0.57	-1.2
1,918,111	+		Sama_1574	0.57	+0.9
1,918,112	-		Sama_1574	0.57	-0.7
1,918,112	-		Sama_1574	0.57	-1.2
1,918,112	-		Sama_1574	0.57	-1.3
1,918,112	-		Sama_1574	0.57	+0.3
1,918,112	-		Sama_1574	0.57	-1.4
1,918,215	+		Sama_1574	0.71	+0.6
1,918,215	+		Sama_1574	0.71	-0.3
1,918,216	-		Sama_1574	0.71	+0.1
1,918,232	+		Sama_1574	0.73	-0.7
1,918,232	+		Sama_1574	0.73	-0.1
1,918,240	+		Sama_1574	0.74	+0.4
1,918,240	+		Sama_1574	0.74	+1.5
1,918,240	+		Sama_1574	0.74	-0.7
1,918,241	-		Sama_1574	0.74	-1.1
1,918,252	+		Sama_1574	0.75	+1.1
1,918,313	+		Sama_1574	0.83	+0.0
1,918,313	+		Sama_1574	0.83	-0.1
1,918,333	+		Sama_1574	0.86	+0.2
1,918,335	+		Sama_1574	0.86	-0.4
1,918,336	-		Sama_1574	0.86	-0.2
1,918,344	+		Sama_1574	0.87	-0.9
1,918,351	-		Sama_1574	0.88	-1.3