Strain Fitness in Shewanella amazonensis SB2B around Sama_1498

Experiment: Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 5 vol%
1,811,624	+		Sama_1496	0.75	+0.2
1,811,635	+		Sama_1496	0.78	+0.5
1,811,635	+		Sama_1496	0.78	+0.3
1,811,636	-		Sama_1496	0.78	-1.0
1,811,636	-		Sama_1496	0.78	+0.0
1,811,636	-		Sama_1496	0.78	+3.3
1,811,636	-		Sama_1496	0.78	-0.5
1,811,637	+		Sama_1496	0.78	-1.0
1,811,638	-		Sama_1496	0.78	-0.4
1,811,638	-		Sama_1496	0.78	-1.0
1,811,638	-		Sama_1496	0.78	-1.0
1,811,662	+		Sama_1496	0.84	-0.5
1,811,671	-		Sama_1496	0.86	+0.7
1,811,691	-				+0.4
1,811,792	+				+0.2
1,811,793	-				-0.0
1,811,793	-				-0.2
1,811,928	-	pflA	Sama_1497	0.18	-1.4
1,811,970	+	pflA	Sama_1497	0.24	+0.6
1,811,999	-	pflA	Sama_1497	0.28	+0.1
1,812,030	-	pflA	Sama_1497	0.32	+0.6
1,812,065	+	pflA	Sama_1497	0.37	+2.0
1,812,130	+	pflA	Sama_1497	0.46	-1.5
1,812,130	+	pflA	Sama_1497	0.46	-0.0
1,812,131	-	pflA	Sama_1497	0.46	-0.7
1,812,131	-	pflA	Sama_1497	0.46	-1.2
1,812,131	-	pflA	Sama_1497	0.46	+2.0
1,812,131	-	pflA	Sama_1497	0.46	+0.5
1,812,131	-	pflA	Sama_1497	0.46	-0.2
1,812,131	-	pflA	Sama_1497	0.46	+0.1
1,812,169	+	pflA	Sama_1497	0.51	-2.0
1,812,175	+	pflA	Sama_1497	0.52	+0.4
1,812,175	+	pflA	Sama_1497	0.52	-0.5
1,812,175	+	pflA	Sama_1497	0.52	-0.8
1,812,176	-	pflA	Sama_1497	0.52	+0.6
1,812,176	-	pflA	Sama_1497	0.52	-0.2
1,812,176	-	pflA	Sama_1497	0.52	-0.2
1,812,228	+	pflA	Sama_1497	0.59	-0.2
1,812,228	+	pflA	Sama_1497	0.59	-0.2
1,812,229	-	pflA	Sama_1497	0.59	+0.7
1,812,286	+	pflA	Sama_1497	0.67	-0.4
1,812,287	-	pflA	Sama_1497	0.67	-0.3
1,812,345	-	pflA	Sama_1497	0.75	-0.4
1,812,453	+	pflA	Sama_1497	0.89	-0.7
1,812,453	+	pflA	Sama_1497	0.89	+1.0
1,812,606	-				+0.4
1,812,620	+				-1.2
1,812,633	+				+1.0
1,812,633	+				-0.6
1,812,633	+				-1.0
1,812,634	-				-0.1
1,812,704	-				-0.0
1,812,704	-				+0.8
1,812,725	+				-0.6
1,812,824	+				+2.5
1,812,912	+		Sama_1498	0.13	+0.4
1,812,913	-		Sama_1498	0.13	+0.3
1,813,047	+		Sama_1498	0.19	-0.4
1,813,047	+		Sama_1498	0.19	+0.2
1,813,048	-		Sama_1498	0.19	+0.4
1,813,065	-		Sama_1498	0.20	-1.0
1,813,065	-		Sama_1498	0.20	+1.3
1,813,075	-		Sama_1498	0.20	-1.0
1,813,118	+		Sama_1498	0.22	+1.4
1,813,118	+		Sama_1498	0.22	-0.4
1,813,119	-		Sama_1498	0.22	-1.0
1,813,119	-		Sama_1498	0.22	-0.3
1,813,164	+		Sama_1498	0.24	-1.3
1,813,164	+		Sama_1498	0.24	+0.8
1,813,165	-		Sama_1498	0.24	-1.5
1,813,211	+		Sama_1498	0.26	+0.5
1,813,278	-		Sama_1498	0.29	-0.6
1,813,383	-		Sama_1498	0.33	-1.0
1,813,388	+		Sama_1498	0.34	-0.9
1,813,388	+		Sama_1498	0.34	-0.5
1,813,388	+		Sama_1498	0.34	-0.4
1,813,389	-		Sama_1498	0.34	-1.4
1,813,389	-		Sama_1498	0.34	+1.0
1,813,389	-		Sama_1498	0.34	-0.9
1,813,401	+		Sama_1498	0.34	+0.1
1,813,401	+		Sama_1498	0.34	-0.2
1,813,430	+		Sama_1498	0.36	-0.6
1,813,485	-		Sama_1498	0.38	-2.7
1,813,506	+		Sama_1498	0.39	+1.4
1,813,525	+		Sama_1498	0.40	+0.1
1,813,525	+		Sama_1498	0.40	-0.2
1,813,525	+		Sama_1498	0.40	+0.4
1,813,526	-		Sama_1498	0.40	+0.5
1,813,526	-		Sama_1498	0.40	-1.6
1,813,526	-		Sama_1498	0.40	-0.9
1,813,568	+		Sama_1498	0.42	-0.9
1,813,569	-		Sama_1498	0.42	-0.2
1,813,569	-		Sama_1498	0.42	-0.6
1,813,658	+		Sama_1498	0.46	-0.2
1,813,659	-		Sama_1498	0.46	-1.2
1,813,659	-		Sama_1498	0.46	-0.6
1,813,817	+		Sama_1498	0.52	-0.2
1,813,818	-		Sama_1498	0.53	-0.0
1,813,825	-		Sama_1498	0.53	-0.9
1,813,860	+		Sama_1498	0.54	+1.0
1,814,042	+		Sama_1498	0.62	-0.7
1,814,042	+		Sama_1498	0.62	-1.0
1,814,042	+		Sama_1498	0.62	-0.7
1,814,042	+		Sama_1498	0.62	-0.0
1,814,042	+		Sama_1498	0.62	-1.7
1,814,043	-		Sama_1498	0.62	+1.5
1,814,043	-		Sama_1498	0.62	-0.5
1,814,043	-		Sama_1498	0.62	-2.7
1,814,043	-		Sama_1498	0.62	-0.3
1,814,043	-		Sama_1498	0.62	+0.0
1,814,123	+		Sama_1498	0.66	-0.9
1,814,175	-		Sama_1498	0.68	-0.0
1,814,181	-		Sama_1498	0.68	+0.4
1,814,243	-		Sama_1498	0.71	-0.4
1,814,339	+		Sama_1498	0.75	-0.5
1,814,384	+		Sama_1498	0.77	-0.1
1,814,444	+		Sama_1498	0.80	-0.7
1,814,444	+		Sama_1498	0.80	-0.4
1,814,444	+		Sama_1498	0.80	-0.1
1,814,444	+		Sama_1498	0.80	-0.8
1,814,444	+		Sama_1498	0.80	-0.6
1,814,444	+		Sama_1498	0.80	-0.0
1,814,444	+		Sama_1498	0.80	+0.5
1,814,444	+		Sama_1498	0.80	+0.4
1,814,444	+		Sama_1498	0.80	+0.2
1,814,445	-		Sama_1498	0.80	-0.0
1,814,445	-		Sama_1498	0.80	-1.5
1,814,445	-		Sama_1498	0.80	-0.0
1,814,455	+		Sama_1498	0.80	+0.1
1,814,489	+		Sama_1498	0.82	-0.5
1,814,495	+		Sama_1498	0.82	-1.3
1,814,495	+		Sama_1498	0.82	-1.2
1,814,495	+		Sama_1498	0.82	-0.0
1,814,495	+		Sama_1498	0.82	-0.1
1,814,495	+		Sama_1498	0.82	-0.0
1,814,495	+		Sama_1498	0.82	-0.3
1,814,495	+		Sama_1498	0.82	-0.6
1,814,495	+		Sama_1498	0.82	-0.7
1,814,495	+		Sama_1498	0.82	+0.5
1,814,495	+		Sama_1498	0.82	-0.8
1,814,495	+		Sama_1498	0.82	-0.6
1,814,496	-		Sama_1498	0.82	+1.0
1,814,496	-		Sama_1498	0.82	-0.2
1,814,496	-		Sama_1498	0.82	-0.9
1,814,496	-		Sama_1498	0.82	-1.4
1,814,525	+		Sama_1498	0.83	-1.6
1,814,525	+		Sama_1498	0.83	-0.6
1,814,551	-		Sama_1498	0.85	-1.1
1,814,551	-		Sama_1498	0.85	-0.2
1,814,719	-				-0.2
1,814,792	+				-2.9
1,814,801	+				-2.4
1,814,801	+				+0.3
1,814,801	+				+0.0
1,814,801	+				+1.0
1,814,802	-				+0.8
1,814,802	-				-1.6
1,814,824	+				-0.2
1,814,824	+				-0.2
1,814,825	-				-0.1
1,814,905	-				-1.4
1,814,905	-				-0.6
1,814,916	+				-1.9
1,814,916	+				-2.1
1,814,917	-				-1.0
1,815,032	+				+0.4
1,815,032	+				-0.2
1,815,033	-				-0.6
1,815,084	+				-0.1
1,815,121	+				-1.4
1,815,192	-				+0.6
1,815,219	-				-0.2
1,815,221	+				+0.7
1,815,221	+				-2.2
1,815,222	-				-0.9
1,815,252	-				+0.5
1,815,266	+				-0.6
1,815,266	+				+0.4
1,815,266	+				-0.0
1,815,267	-				-0.9
1,815,267	-				-1.2
1,815,285	+				+1.2
1,815,285	+				+0.6
1,815,285	+				-0.3
1,815,285	+				-0.2
1,815,285	+				-1.7
1,815,285	+				-0.7
1,815,286	-				-0.6
1,815,286	-				+0.2
1,815,298	+				-0.8
1,815,356	+				-0.4
1,815,500	+		Sama_1499	0.13	-0.0
1,815,500	+		Sama_1499	0.13	-1.9
1,815,501	-		Sama_1499	0.13	-0.2
1,815,573	+		Sama_1499	0.18	+0.1
1,815,573	+		Sama_1499	0.18	+1.2
1,815,574	-		Sama_1499	0.18	+0.1
1,815,636	+		Sama_1499	0.22	+0.5
1,815,636	+		Sama_1499	0.22	-0.9
1,815,637	-		Sama_1499	0.22	+0.8
1,815,637	-		Sama_1499	0.22	-0.4
1,815,637	-		Sama_1499	0.22	-0.2
1,815,637	-		Sama_1499	0.22	+0.1
1,815,637	-		Sama_1499	0.22	-0.3
1,815,650	+		Sama_1499	0.23	+0.0
1,815,651	-		Sama_1499	0.23	+0.0
1,815,653	+		Sama_1499	0.23	-1.2
1,815,653	+		Sama_1499	0.23	-0.3
1,815,654	-		Sama_1499	0.23	+0.3
1,815,690	-		Sama_1499	0.25	+0.3
1,815,719	+		Sama_1499	0.27	+1.0
1,815,719	+		Sama_1499	0.27	-0.9
1,815,719	+		Sama_1499	0.27	-1.9
1,815,719	+		Sama_1499	0.27	+0.3
1,815,719	+		Sama_1499	0.27	-1.9
1,815,719	+		Sama_1499	0.27	-0.9
1,815,719	+		Sama_1499	0.27	-0.4
1,815,720	-		Sama_1499	0.27	-0.3
1,815,720	-		Sama_1499	0.27	+1.0
1,815,720	-		Sama_1499	0.27	-0.0
1,815,721	+		Sama_1499	0.27	+0.6
1,815,721	+		Sama_1499	0.27	-0.3
1,815,721	+		Sama_1499	0.27	-0.2
1,815,721	+		Sama_1499	0.27	-0.4
1,815,721	+		Sama_1499	0.27	-1.9
1,815,721	+		Sama_1499	0.27	-0.0
1,815,721	+		Sama_1499	0.27	-0.0
1,815,721	+		Sama_1499	0.27	-0.0
1,815,721	+		Sama_1499	0.27	+0.8
1,815,721	+		Sama_1499	0.27	-1.0
1,815,721	+		Sama_1499	0.27	-1.0
1,815,721	+		Sama_1499	0.27	-0.1
1,815,721	+		Sama_1499	0.27	-0.0
1,815,722	-		Sama_1499	0.27	+0.5
1,815,722	-		Sama_1499	0.27	-1.0
1,815,722	-		Sama_1499	0.27	-0.7
1,815,722	-		Sama_1499	0.27	+0.2
1,815,722	-		Sama_1499	0.27	+0.3
1,815,722	-		Sama_1499	0.27	+1.1
1,815,722	-		Sama_1499	0.27	-0.0
1,815,722	-		Sama_1499	0.27	+0.3
1,815,722	-		Sama_1499	0.27	+0.4
1,815,722	-		Sama_1499	0.27	-1.4
1,815,722	-		Sama_1499	0.27	-0.4
1,815,722	-		Sama_1499	0.27	-0.6
1,815,722	-		Sama_1499	0.27	+0.8
1,815,722	-		Sama_1499	0.27	-0.7
1,815,725	+		Sama_1499	0.27	-0.0
1,815,769	-		Sama_1499	0.30	+0.3
1,815,842	-		Sama_1499	0.35	-0.3