Strain Fitness in Shewanella amazonensis SB2B around Sama_0769

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0767 and Sama_0768 are separated by 53 nucleotidesSama_0768 and Sama_0769 are separated by 253 nucleotidesSama_0769 and Sama_0770 are separated by 45 nucleotidesSama_0770 and Sama_0771 are separated by 7 nucleotides Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891 _0767 Sama_0768: Sama_0768 - hypothetical protein (RefSeq), at 951,945 to 952,535 _0768 Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165 _0769 Sama_0770: Sama_0770 - aromatic acid decarboxylase (RefSeq), at 954,211 to 954,852 _0770 Sama_0771: Sama_0771 - hypoxanthine phosphoribosyltransferase (RefSeq), at 954,860 to 955,390 _0771 Position (kb) 952 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2at 951.816 kb on + strandat 951.853 kb on - strandat 951.853 kb on - strandat 951.889 kb on + strandat 951.890 kb on - strandat 951.901 kb on - strandat 951.947 kb on - strandat 951.999 kb on + strandat 952.008 kb on - strand, within Sama_0768at 952.176 kb on + strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.261 kb on + strand, within Sama_0768at 952.573 kb on + strandat 952.617 kb on + strandat 952.617 kb on + strandat 952.618 kb on - strandat 952.618 kb on - strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.725 kb on - strandat 952.729 kb on + strandat 952.729 kb on + strandat 952.768 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.797 kb on - strandat 952.891 kb on + strandat 952.926 kb on + strandat 953.050 kb on + strand, within Sama_0769at 953.050 kb on + strand, within Sama_0769at 953.127 kb on + strand, within Sama_0769at 953.272 kb on + strand, within Sama_0769at 953.334 kb on + strand, within Sama_0769at 953.364 kb on + strand, within Sama_0769at 953.400 kb on + strand, within Sama_0769at 953.400 kb on + strand, within Sama_0769at 953.511 kb on + strand, within Sama_0769at 953.511 kb on + strand, within Sama_0769at 953.697 kb on + strand, within Sama_0769at 953.718 kb on + strand, within Sama_0769at 953.773 kb on + strand, within Sama_0769at 953.773 kb on + strand, within Sama_0769at 953.773 kb on + strand, within Sama_0769at 953.922 kb on + strand, within Sama_0769at 953.922 kb on + strand, within Sama_0769at 953.951 kb on - strand, within Sama_0769at 953.965 kb on - strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.814 kb on + strandat 954.814 kb on + strandat 954.815 kb on - strandat 954.856 kb on + strandat 954.857 kb on - strandat 954.857 kb on - strandat 954.931 kb on + strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.049 kb on - strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.144 kb on + strand, within Sama_0771at 955.160 kb on - strand, within Sama_0771

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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951,816 + +2.1
951,853 - -0.2
951,853 - -0.0
951,889 + +1.2
951,890 - +1.2
951,901 - -0.2
951,947 - +0.8
951,999 + -0.0
952,008 - Sama_0768 0.11 +0.0
952,176 + Sama_0768 0.39 -1.0
952,177 - Sama_0768 0.39 -0.4
952,177 - Sama_0768 0.39 -0.3
952,177 - Sama_0768 0.39 -0.1
952,261 + Sama_0768 0.53 -0.9
952,573 + -0.5
952,617 + +0.8
952,617 + +0.9
952,618 - -1.7
952,618 - +0.9
952,724 + -0.2
952,724 + -0.2
952,724 + +0.3
952,725 - -2.2
952,729 + +0.3
952,729 + +0.1
952,768 + +0.2
952,796 + +0.1
952,796 + -1.4
952,796 + -0.4
952,796 + -0.7
952,797 - -1.8
952,891 + -0.8
952,926 + +1.3
953,050 + Sama_0769 0.19 -0.1
953,050 + Sama_0769 0.19 -1.5
953,127 + Sama_0769 0.25 +0.3
953,272 + Sama_0769 0.35 +0.1
953,334 + Sama_0769 0.40 -0.8
953,364 + Sama_0769 0.42 -0.9
953,400 + Sama_0769 0.44 +0.0
953,400 + Sama_0769 0.44 +0.5
953,511 + Sama_0769 0.52 -1.0
953,511 + Sama_0769 0.52 -0.5
953,697 + Sama_0769 0.66 -0.8
953,718 + Sama_0769 0.67 +2.3
953,773 + Sama_0769 0.71 +0.1
953,773 + Sama_0769 0.71 +0.3
953,773 + Sama_0769 0.71 -2.1
953,922 + Sama_0769 0.82 -0.7
953,922 + Sama_0769 0.82 +0.1
953,951 - Sama_0769 0.84 +1.9
953,965 - Sama_0769 0.85 +1.0
954,022 + Sama_0769 0.90 -0.5
954,022 + Sama_0769 0.90 -0.7
954,022 + Sama_0769 0.90 +1.0
954,022 + Sama_0769 0.90 +0.0
954,022 + Sama_0769 0.90 -1.1
954,022 + Sama_0769 0.90 +0.0
954,023 - Sama_0769 0.90 -1.0
954,023 - Sama_0769 0.90 -0.2
954,023 - Sama_0769 0.90 +1.3
954,038 + -0.1
954,038 + +0.1
954,038 + +0.6
954,038 + +1.0
954,038 + -2.0
954,814 + +0.1
954,814 + +0.5
954,815 - +0.8
954,856 + -1.0
954,857 - -0.1
954,857 - -0.9
954,931 + Sama_0771 0.13 +0.7
954,945 - Sama_0771 0.16 +0.9
954,945 - Sama_0771 0.16 -1.2
954,945 - Sama_0771 0.16 -0.1
955,048 + Sama_0771 0.35 -0.1
955,048 + Sama_0771 0.35 +0.5
955,049 - Sama_0771 0.36 +1.8
955,064 + Sama_0771 0.38 +0.6
955,064 + Sama_0771 0.38 +0.5
955,065 - Sama_0771 0.39 +1.2
955,065 - Sama_0771 0.39 +1.8
955,144 + Sama_0771 0.53 -0.6
955,160 - Sama_0771 0.56 +0.2

Or see this region's nucleotide sequence