Strain Fitness in Shewanella amazonensis SB2B around Sama_0660

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0659 and Sama_0660 are separated by 68 nucleotidesSama_0660 and Sama_0661 are separated by 6 nucleotidesSama_0661 and Sama_0662 are separated by 236 nucleotides Sama_0659: Sama_0659 - ABC transporter, ATP-binding protein (RefSeq), at 815,502 to 817,286 _0659 Sama_0660: Sama_0660 - hypothetical protein (RefSeq), at 817,355 to 817,615 _0660 Sama_0661: Sama_0661 - hypothetical protein (RefSeq), at 817,622 to 817,813 _0661 Sama_0662: Sama_0662 - hypothetical protein (RefSeq), at 818,050 to 818,658 _0662 Position (kb) 817 818Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 816.402 kb on - strand, within Sama_0659at 816.402 kb on - strand, within Sama_0659at 816.402 kb on - strand, within Sama_0659at 816.417 kb on - strand, within Sama_0659at 816.442 kb on + strand, within Sama_0659at 816.442 kb on + strand, within Sama_0659at 816.442 kb on + strand, within Sama_0659at 816.443 kb on - strand, within Sama_0659at 816.443 kb on - strand, within Sama_0659at 816.623 kb on + strand, within Sama_0659at 816.623 kb on + strand, within Sama_0659at 816.689 kb on + strand, within Sama_0659at 816.689 kb on + strand, within Sama_0659at 816.689 kb on + strand, within Sama_0659at 816.689 kb on + strand, within Sama_0659at 816.690 kb on - strand, within Sama_0659at 816.690 kb on - strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.708 kb on + strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.709 kb on - strand, within Sama_0659at 816.729 kb on - strand, within Sama_0659at 816.743 kb on + strand, within Sama_0659at 816.743 kb on + strand, within Sama_0659at 816.743 kb on + strand, within Sama_0659at 816.743 kb on + strand, within Sama_0659at 816.744 kb on - strand, within Sama_0659at 816.793 kb on + strand, within Sama_0659at 816.794 kb on - strand, within Sama_0659at 816.806 kb on + strand, within Sama_0659at 816.806 kb on + strand, within Sama_0659at 816.806 kb on + strand, within Sama_0659at 816.807 kb on - strand, within Sama_0659at 816.818 kb on + strand, within Sama_0659at 816.818 kb on + strand, within Sama_0659at 816.886 kb on + strand, within Sama_0659at 816.887 kb on - strand, within Sama_0659at 816.889 kb on + strand, within Sama_0659at 816.890 kb on - strand, within Sama_0659at 816.890 kb on - strand, within Sama_0659at 816.965 kb on + strand, within Sama_0659at 816.965 kb on + strand, within Sama_0659at 816.966 kb on - strand, within Sama_0659at 817.085 kb on - strand, within Sama_0659at 817.118 kb on + strandat 817.118 kb on + strandat 817.118 kb on + strandat 817.119 kb on - strandat 817.119 kb on - strandat 817.119 kb on - strandat 817.119 kb on - strandat 817.147 kb on - strandat 817.153 kb on + strandat 817.153 kb on + strandat 817.154 kb on - strandat 817.214 kb on + strandat 817.214 kb on + strandat 817.215 kb on - strandat 817.242 kb on + strandat 817.243 kb on - strandat 817.243 kb on - strandat 817.259 kb on + strandat 817.260 kb on - strandat 817.260 kb on - strandat 817.318 kb on + strandat 817.319 kb on - strandat 817.390 kb on + strand, within Sama_0660at 817.390 kb on + strand, within Sama_0660at 817.390 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.478 kb on + strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.479 kb on - strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.488 kb on + strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.489 kb on - strand, within Sama_0660at 817.536 kb on + strand, within Sama_0660at 817.537 kb on - strand, within Sama_0660at 817.570 kb on + strand, within Sama_0660at 817.571 kb on - strand, within Sama_0660at 817.574 kb on - strand, within Sama_0660at 817.590 kb on - strandat 817.607 kb on + strandat 817.619 kb on + strandat 817.619 kb on + strandat 817.620 kb on - strandat 817.627 kb on + strandat 817.627 kb on + strandat 817.627 kb on + strandat 817.642 kb on + strand, within Sama_0661at 817.642 kb on + strand, within Sama_0661at 817.642 kb on + strand, within Sama_0661at 817.706 kb on - strand, within Sama_0661at 817.774 kb on + strand, within Sama_0661at 817.774 kb on + strand, within Sama_0661at 817.833 kb on - strandat 817.833 kb on - strandat 817.858 kb on - strandat 817.865 kb on - strandat 817.871 kb on + strandat 817.872 kb on - strandat 817.898 kb on + strandat 817.898 kb on + strandat 817.899 kb on - strandat 817.899 kb on - strandat 817.899 kb on - strandat 817.899 kb on - strandat 817.901 kb on - strandat 817.901 kb on - strandat 817.932 kb on + strandat 817.932 kb on + strandat 817.941 kb on + strandat 817.941 kb on + strandat 817.942 kb on - strandat 817.942 kb on - strandat 817.942 kb on - strandat 817.945 kb on + strandat 817.945 kb on + strandat 817.945 kb on + strandat 817.946 kb on - strandat 818.009 kb on + strandat 818.010 kb on - strandat 818.011 kb on + strandat 818.011 kb on + strandat 818.013 kb on + strandat 818.045 kb on - strandat 818.045 kb on - strandat 818.109 kb on + strandat 818.109 kb on + strandat 818.110 kb on - strandat 818.110 kb on - strandat 818.127 kb on + strand, within Sama_0662at 818.211 kb on - strand, within Sama_0662at 818.232 kb on + strand, within Sama_0662at 818.233 kb on - strand, within Sama_0662at 818.233 kb on - strand, within Sama_0662at 818.237 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.261 kb on + strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.262 kb on - strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.264 kb on + strand, within Sama_0662at 818.265 kb on - strand, within Sama_0662at 818.265 kb on - strand, within Sama_0662at 818.265 kb on - strand, within Sama_0662at 818.265 kb on - strand, within Sama_0662at 818.269 kb on + strand, within Sama_0662at 818.269 kb on + strand, within Sama_0662at 818.269 kb on + strand, within Sama_0662at 818.270 kb on - strand, within Sama_0662at 818.270 kb on - strand, within Sama_0662at 818.270 kb on - strand, within Sama_0662at 818.292 kb on + strand, within Sama_0662at 818.293 kb on - strand, within Sama_0662at 818.358 kb on + strand, within Sama_0662at 818.358 kb on + strand, within Sama_0662at 818.358 kb on + strand, within Sama_0662at 818.359 kb on - strand, within Sama_0662at 818.359 kb on - strand, within Sama_0662at 818.387 kb on + strand, within Sama_0662at 818.387 kb on + strand, within Sama_0662at 818.388 kb on - strand, within Sama_0662at 818.388 kb on - strand, within Sama_0662at 818.388 kb on - strand, within Sama_0662at 818.419 kb on + strand, within Sama_0662at 818.420 kb on - strand, within Sama_0662at 818.469 kb on + strand, within Sama_0662at 818.470 kb on - strand, within Sama_0662at 818.490 kb on + strand, within Sama_0662at 818.490 kb on + strand, within Sama_0662at 818.490 kb on + strand, within Sama_0662at 818.490 kb on + strand, within Sama_0662at 818.490 kb on + strand, within Sama_0662at 818.505 kb on + strand, within Sama_0662at 818.506 kb on - strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.522 kb on + strand, within Sama_0662at 818.523 kb on - strand, within Sama_0662at 818.523 kb on - strand, within Sama_0662at 818.523 kb on - strand, within Sama_0662at 818.523 kb on - strand, within Sama_0662at 818.535 kb on + strand, within Sama_0662at 818.535 kb on + strand, within Sama_0662at 818.535 kb on + strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.536 kb on - strand, within Sama_0662at 818.571 kb on + strand, within Sama_0662at 818.571 kb on + strand, within Sama_0662at 818.571 kb on + strand, within Sama_0662at 818.572 kb on - strand, within Sama_0662at 818.572 kb on - strand, within Sama_0662at 818.572 kb on - strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.578 kb on + strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662at 818.579 kb on - strand, within Sama_0662

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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816,402 - Sama_0659 0.50 -0.4
816,402 - Sama_0659 0.50 +0.6
816,402 - Sama_0659 0.50 -0.4
816,417 - Sama_0659 0.51 +2.1
816,442 + Sama_0659 0.53 -0.8
816,442 + Sama_0659 0.53 -0.0
816,442 + Sama_0659 0.53 -0.2
816,443 - Sama_0659 0.53 -0.1
816,443 - Sama_0659 0.53 -0.1
816,623 + Sama_0659 0.63 -0.1
816,623 + Sama_0659 0.63 -0.3
816,689 + Sama_0659 0.66 -0.4
816,689 + Sama_0659 0.66 -0.0
816,689 + Sama_0659 0.66 +0.0
816,689 + Sama_0659 0.66 -0.5
816,690 - Sama_0659 0.67 +0.9
816,690 - Sama_0659 0.67 +1.1
816,708 + Sama_0659 0.68 +0.7
816,708 + Sama_0659 0.68 +0.7
816,708 + Sama_0659 0.68 -0.1
816,708 + Sama_0659 0.68 +1.4
816,708 + Sama_0659 0.68 +1.8
816,708 + Sama_0659 0.68 +0.2
816,708 + Sama_0659 0.68 +0.2
816,708 + Sama_0659 0.68 +0.3
816,708 + Sama_0659 0.68 +0.2
816,708 + Sama_0659 0.68 +0.2
816,708 + Sama_0659 0.68 +0.4
816,709 - Sama_0659 0.68 +0.4
816,709 - Sama_0659 0.68 -0.9
816,709 - Sama_0659 0.68 +1.1
816,709 - Sama_0659 0.68 -0.7
816,709 - Sama_0659 0.68 -0.5
816,709 - Sama_0659 0.68 +0.1
816,709 - Sama_0659 0.68 +0.3
816,709 - Sama_0659 0.68 +0.1
816,729 - Sama_0659 0.69 -0.9
816,743 + Sama_0659 0.70 +0.4
816,743 + Sama_0659 0.70 -1.4
816,743 + Sama_0659 0.70 +0.4
816,743 + Sama_0659 0.70 -0.6
816,744 - Sama_0659 0.70 -0.3
816,793 + Sama_0659 0.72 -1.4
816,794 - Sama_0659 0.72 -0.5
816,806 + Sama_0659 0.73 -0.2
816,806 + Sama_0659 0.73 +0.2
816,806 + Sama_0659 0.73 +0.4
816,807 - Sama_0659 0.73 -0.8
816,818 + Sama_0659 0.74 +0.2
816,818 + Sama_0659 0.74 +0.0
816,886 + Sama_0659 0.78 +0.0
816,887 - Sama_0659 0.78 -0.7
816,889 + Sama_0659 0.78 -0.1
816,890 - Sama_0659 0.78 +0.7
816,890 - Sama_0659 0.78 +0.6
816,965 + Sama_0659 0.82 +0.9
816,965 + Sama_0659 0.82 +0.1
816,966 - Sama_0659 0.82 -0.5
817,085 - Sama_0659 0.89 +0.6
817,118 + +1.3
817,118 + +1.2
817,118 + -1.4
817,119 - +1.6
817,119 - -0.2
817,119 - -0.6
817,119 - +0.5
817,147 - +0.7
817,153 + +1.4
817,153 + +0.9
817,154 - -0.7
817,214 + +0.4
817,214 + -0.6
817,215 - +0.4
817,242 + +0.2
817,243 - +0.5
817,243 - +0.4
817,259 + +0.4
817,260 - +0.2
817,260 - -0.3
817,318 + +2.2
817,319 - +2.9
817,390 + Sama_0660 0.13 +3.1
817,390 + Sama_0660 0.13 +2.7
817,390 + Sama_0660 0.13 +2.7
817,478 + Sama_0660 0.47 +2.3
817,478 + Sama_0660 0.47 +3.1
817,478 + Sama_0660 0.47 +3.8
817,478 + Sama_0660 0.47 +2.3
817,478 + Sama_0660 0.47 +3.1
817,478 + Sama_0660 0.47 +3.0
817,478 + Sama_0660 0.47 +2.8
817,478 + Sama_0660 0.47 +3.4
817,479 - Sama_0660 0.48 +2.8
817,479 - Sama_0660 0.48 +3.5
817,479 - Sama_0660 0.48 +3.2
817,479 - Sama_0660 0.48 +3.7
817,479 - Sama_0660 0.48 +3.6
817,479 - Sama_0660 0.48 +3.3
817,488 + Sama_0660 0.51 +3.3
817,488 + Sama_0660 0.51 +3.6
817,488 + Sama_0660 0.51 +3.8
817,488 + Sama_0660 0.51 +3.2
817,488 + Sama_0660 0.51 +3.1
817,488 + Sama_0660 0.51 +3.4
817,488 + Sama_0660 0.51 +2.6
817,489 - Sama_0660 0.51 +2.8
817,489 - Sama_0660 0.51 +3.2
817,489 - Sama_0660 0.51 +3.4
817,489 - Sama_0660 0.51 +3.3
817,489 - Sama_0660 0.51 +3.0
817,489 - Sama_0660 0.51 +3.1
817,536 + Sama_0660 0.69 +0.8
817,537 - Sama_0660 0.70 +2.2
817,570 + Sama_0660 0.82 +0.1
817,571 - Sama_0660 0.83 -0.9
817,574 - Sama_0660 0.84 +0.1
817,590 - -1.2
817,607 + +0.4
817,619 + +0.5
817,619 + -1.9
817,620 - -0.6
817,627 + -0.3
817,627 + +1.4
817,627 + +0.2
817,642 + Sama_0661 0.10 +0.1
817,642 + Sama_0661 0.10 +0.1
817,642 + Sama_0661 0.10 +0.4
817,706 - Sama_0661 0.44 +0.7
817,774 + Sama_0661 0.79 -0.8
817,774 + Sama_0661 0.79 +0.5
817,833 - -1.0
817,833 - -0.5
817,858 - +0.9
817,865 - -0.2
817,871 + +0.4
817,872 - +1.0
817,898 + -0.4
817,898 + +0.6
817,899 - +1.6
817,899 - +0.1
817,899 - +0.1
817,899 - +0.4
817,901 - +0.1
817,901 - +0.5
817,932 + -1.4
817,932 + -0.0
817,941 + +0.6
817,941 + -0.4
817,942 - -0.8
817,942 - -0.1
817,942 - -0.0
817,945 + -0.8
817,945 + +1.0
817,945 + -0.5
817,946 - -0.9
818,009 + -0.1
818,010 - -0.0
818,011 + -2.1
818,011 + -1.4
818,013 + +0.3
818,045 - +0.7
818,045 - +0.2
818,109 + -0.0
818,109 + -0.8
818,110 - -1.4
818,110 - -0.2
818,127 + Sama_0662 0.13 +0.0
818,211 - Sama_0662 0.26 -0.9
818,232 + Sama_0662 0.30 -0.5
818,233 - Sama_0662 0.30 -0.1
818,233 - Sama_0662 0.30 -0.6
818,237 + Sama_0662 0.31 +0.4
818,261 + Sama_0662 0.35 +1.4
818,261 + Sama_0662 0.35 -1.2
818,261 + Sama_0662 0.35 -0.4
818,261 + Sama_0662 0.35 -0.3
818,261 + Sama_0662 0.35 +0.1
818,261 + Sama_0662 0.35 +0.4
818,262 - Sama_0662 0.35 +0.4
818,262 - Sama_0662 0.35 +0.9
818,262 - Sama_0662 0.35 +0.8
818,262 - Sama_0662 0.35 +0.8
818,262 - Sama_0662 0.35 -0.1
818,262 - Sama_0662 0.35 -1.2
818,262 - Sama_0662 0.35 -1.2
818,264 + Sama_0662 0.35 -0.6
818,264 + Sama_0662 0.35 +0.0
818,264 + Sama_0662 0.35 +0.4
818,264 + Sama_0662 0.35 +0.3
818,264 + Sama_0662 0.35 -0.1
818,264 + Sama_0662 0.35 -0.0
818,265 - Sama_0662 0.35 -0.2
818,265 - Sama_0662 0.35 -0.2
818,265 - Sama_0662 0.35 +0.4
818,265 - Sama_0662 0.35 -0.1
818,269 + Sama_0662 0.36 -1.0
818,269 + Sama_0662 0.36 +0.1
818,269 + Sama_0662 0.36 -0.5
818,270 - Sama_0662 0.36 +0.2
818,270 - Sama_0662 0.36 +0.1
818,270 - Sama_0662 0.36 -1.5
818,292 + Sama_0662 0.40 +0.1
818,293 - Sama_0662 0.40 -0.0
818,358 + Sama_0662 0.51 -0.4
818,358 + Sama_0662 0.51 +1.1
818,358 + Sama_0662 0.51 -1.7
818,359 - Sama_0662 0.51 +0.7
818,359 - Sama_0662 0.51 -0.1
818,387 + Sama_0662 0.55 -2.0
818,387 + Sama_0662 0.55 +0.5
818,388 - Sama_0662 0.56 -0.9
818,388 - Sama_0662 0.56 +0.4
818,388 - Sama_0662 0.56 +0.8
818,419 + Sama_0662 0.61 +1.0
818,420 - Sama_0662 0.61 -1.5
818,469 + Sama_0662 0.69 +0.7
818,470 - Sama_0662 0.69 -0.0
818,490 + Sama_0662 0.72 +0.2
818,490 + Sama_0662 0.72 +0.2
818,490 + Sama_0662 0.72 +0.8
818,490 + Sama_0662 0.72 -0.3
818,490 + Sama_0662 0.72 +0.3
818,505 + Sama_0662 0.75 -0.6
818,506 - Sama_0662 0.75 -0.5
818,522 + Sama_0662 0.78 -0.0
818,522 + Sama_0662 0.78 -1.0
818,522 + Sama_0662 0.78 -0.1
818,522 + Sama_0662 0.78 +0.8
818,522 + Sama_0662 0.78 -0.6
818,522 + Sama_0662 0.78 -0.1
818,523 - Sama_0662 0.78 +0.5
818,523 - Sama_0662 0.78 +1.4
818,523 - Sama_0662 0.78 +1.4
818,523 - Sama_0662 0.78 +0.1
818,535 + Sama_0662 0.80 +0.1
818,535 + Sama_0662 0.80 -1.7
818,535 + Sama_0662 0.80 -0.3
818,536 - Sama_0662 0.80 -0.6
818,536 - Sama_0662 0.80 +2.2
818,536 - Sama_0662 0.80 +0.1
818,536 - Sama_0662 0.80 -0.6
818,536 - Sama_0662 0.80 +1.2
818,536 - Sama_0662 0.80 -0.4
818,536 - Sama_0662 0.80 -0.0
818,536 - Sama_0662 0.80 -0.1
818,571 + Sama_0662 0.86 -0.9
818,571 + Sama_0662 0.86 +0.5
818,571 + Sama_0662 0.86 -0.6
818,572 - Sama_0662 0.86 -0.2
818,572 - Sama_0662 0.86 +0.1
818,572 - Sama_0662 0.86 +0.4
818,578 + Sama_0662 0.87 +0.4
818,578 + Sama_0662 0.87 +0.3
818,578 + Sama_0662 0.87 +0.6
818,578 + Sama_0662 0.87 -0.6
818,578 + Sama_0662 0.87 -0.6
818,578 + Sama_0662 0.87 -0.8
818,578 + Sama_0662 0.87 -0.1
818,578 + Sama_0662 0.87 -0.8
818,579 - Sama_0662 0.87 +0.5
818,579 - Sama_0662 0.87 +0.1
818,579 - Sama_0662 0.87 -1.1
818,579 - Sama_0662 0.87 +0.8
818,579 - Sama_0662 0.87 +0.3
818,579 - Sama_0662 0.87 +1.1

Or see this region's nucleotide sequence