Strain Fitness in Shewanella amazonensis SB2B around Sama_0591

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0590 and Sama_0591 are separated by 223 nucleotidesSama_0591 and Sama_0592 are separated by 235 nucleotides Sama_0590: Sama_0590 - putative TonB-dependent receptor protein (RefSeq), at 736,305 to 738,518 _0590 Sama_0591: Sama_0591 - hypothetical protein (RefSeq), at 738,742 to 739,443 _0591 Sama_0592: Sama_0592 - smc-like chromosome partitioning protein (DUF3584) (from data), at 739,679 to 743,359 _0592 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2at 737.764 kb on + strand, within Sama_0590at 737.764 kb on + strand, within Sama_0590at 737.764 kb on + strand, within Sama_0590at 737.765 kb on - strand, within Sama_0590at 737.778 kb on - strand, within Sama_0590at 737.872 kb on + strand, within Sama_0590at 737.878 kb on + strand, within Sama_0590at 737.878 kb on + strand, within Sama_0590at 737.878 kb on + strand, within Sama_0590at 737.879 kb on - strand, within Sama_0590at 737.879 kb on - strand, within Sama_0590at 737.879 kb on - strand, within Sama_0590at 737.879 kb on - strand, within Sama_0590at 737.879 kb on - strand, within Sama_0590at 737.941 kb on + strand, within Sama_0590at 737.942 kb on - strand, within Sama_0590at 738.053 kb on + strand, within Sama_0590at 738.053 kb on + strand, within Sama_0590at 738.053 kb on + strand, within Sama_0590at 738.054 kb on - strand, within Sama_0590at 738.054 kb on - strand, within Sama_0590at 738.066 kb on + strand, within Sama_0590at 738.066 kb on + strand, within Sama_0590at 738.067 kb on - strand, within Sama_0590at 738.067 kb on - strand, within Sama_0590at 738.106 kb on + strand, within Sama_0590at 738.106 kb on + strand, within Sama_0590at 738.106 kb on + strand, within Sama_0590at 738.106 kb on + strand, within Sama_0590at 738.107 kb on - strand, within Sama_0590at 738.107 kb on - strand, within Sama_0590at 738.107 kb on - strand, within Sama_0590at 738.107 kb on - strand, within Sama_0590at 738.107 kb on - strand, within Sama_0590at 738.109 kb on + strand, within Sama_0590at 738.109 kb on + strand, within Sama_0590at 738.110 kb on - strand, within Sama_0590at 738.110 kb on - strand, within Sama_0590at 738.127 kb on + strand, within Sama_0590at 738.127 kb on + strand, within Sama_0590at 738.128 kb on - strand, within Sama_0590at 738.128 kb on - strand, within Sama_0590at 738.128 kb on - strand, within Sama_0590at 738.128 kb on - strand, within Sama_0590at 738.226 kb on + strand, within Sama_0590at 738.226 kb on + strand, within Sama_0590at 738.227 kb on - strand, within Sama_0590at 738.245 kb on + strand, within Sama_0590at 738.245 kb on + strand, within Sama_0590at 738.246 kb on - strand, within Sama_0590at 738.246 kb on - strand, within Sama_0590at 738.246 kb on - strand, within Sama_0590at 738.246 kb on - strand, within Sama_0590at 738.247 kb on + strand, within Sama_0590at 738.247 kb on + strand, within Sama_0590at 738.247 kb on + strand, within Sama_0590at 738.247 kb on + strand, within Sama_0590at 738.247 kb on + strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.248 kb on - strand, within Sama_0590at 738.289 kb on + strand, within Sama_0590at 738.289 kb on + strand, within Sama_0590at 738.289 kb on + strand, within Sama_0590at 738.290 kb on - strand, within Sama_0590at 738.290 kb on - strand, within Sama_0590at 738.290 kb on - strand, within Sama_0590at 738.299 kb on + strandat 738.299 kb on + strandat 738.299 kb on + strandat 738.300 kb on - strandat 738.509 kb on + strandat 738.510 kb on - strandat 738.548 kb on - strandat 738.553 kb on + strandat 738.554 kb on - strandat 738.558 kb on + strandat 738.574 kb on + strandat 738.593 kb on + strandat 738.617 kb on + strandat 738.618 kb on - strandat 738.644 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.669 kb on + strandat 738.670 kb on - strandat 738.670 kb on - strandat 738.670 kb on - strandat 738.678 kb on + strandat 738.679 kb on - strandat 738.687 kb on + strandat 738.687 kb on + strandat 738.731 kb on + strandat 738.741 kb on + strandat 738.741 kb on + strandat 738.843 kb on + strand, within Sama_0591at 738.843 kb on + strand, within Sama_0591at 738.913 kb on + strand, within Sama_0591at 738.913 kb on + strand, within Sama_0591at 738.913 kb on + strand, within Sama_0591at 738.913 kb on + strand, within Sama_0591at 738.914 kb on - strand, within Sama_0591at 738.914 kb on - strand, within Sama_0591at 738.914 kb on - strand, within Sama_0591at 738.957 kb on - strand, within Sama_0591at 739.026 kb on + strand, within Sama_0591at 739.033 kb on + strand, within Sama_0591at 739.033 kb on + strand, within Sama_0591at 739.034 kb on - strand, within Sama_0591at 739.034 kb on - strand, within Sama_0591at 739.034 kb on - strand, within Sama_0591at 739.061 kb on + strand, within Sama_0591at 739.061 kb on + strand, within Sama_0591at 739.061 kb on + strand, within Sama_0591at 739.062 kb on - strand, within Sama_0591at 739.062 kb on - strand, within Sama_0591at 739.062 kb on - strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.102 kb on + strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.103 kb on - strand, within Sama_0591at 739.122 kb on + strand, within Sama_0591at 739.123 kb on - strand, within Sama_0591at 739.123 kb on - strand, within Sama_0591at 739.123 kb on - strand, within Sama_0591at 739.128 kb on + strand, within Sama_0591at 739.129 kb on - strand, within Sama_0591at 739.129 kb on - strand, within Sama_0591at 739.129 kb on - strand, within Sama_0591at 739.173 kb on + strand, within Sama_0591at 739.198 kb on + strand, within Sama_0591at 739.198 kb on + strand, within Sama_0591at 739.199 kb on - strand, within Sama_0591at 739.199 kb on - strand, within Sama_0591at 739.206 kb on + strand, within Sama_0591at 739.318 kb on - strand, within Sama_0591at 739.329 kb on + strand, within Sama_0591at 739.329 kb on + strand, within Sama_0591at 739.329 kb on + strand, within Sama_0591at 739.329 kb on + strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.330 kb on - strand, within Sama_0591at 739.351 kb on - strand, within Sama_0591at 739.404 kb on + strandat 739.417 kb on + strandat 739.417 kb on + strandat 739.417 kb on + strandat 739.441 kb on + strandat 739.459 kb on - strandat 739.490 kb on + strandat 739.491 kb on - strandat 739.541 kb on + strandat 739.546 kb on + strandat 739.546 kb on + strandat 739.546 kb on + strandat 739.546 kb on + strandat 739.547 kb on - strandat 739.547 kb on - strandat 739.549 kb on + strandat 739.549 kb on + strandat 739.549 kb on + strandat 739.549 kb on + strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.550 kb on - strandat 739.583 kb on + strandat 739.583 kb on + strandat 739.583 kb on + strandat 739.583 kb on + strandat 739.583 kb on + strandat 739.583 kb on + strandat 739.584 kb on - strandat 739.584 kb on - strandat 739.584 kb on - strandat 739.584 kb on - strandat 739.584 kb on - strandat 739.584 kb on - strandat 739.587 kb on + strandat 739.587 kb on + strandat 739.588 kb on - strandat 739.588 kb on - strandat 739.588 kb on - strandat 739.593 kb on + strandat 739.594 kb on - strandat 739.603 kb on + strandat 739.603 kb on + strandat 739.604 kb on - strandat 739.604 kb on - strandat 739.604 kb on - strandat 739.668 kb on + strandat 739.674 kb on + strandat 739.675 kb on - strandat 739.684 kb on + strandat 739.684 kb on + strandat 739.684 kb on + strandat 739.685 kb on - strandat 739.685 kb on - strandat 739.685 kb on - strandat 739.754 kb on - strandat 739.759 kb on + strandat 739.759 kb on + strandat 739.759 kb on + strandat 739.759 kb on + strandat 739.759 kb on + strandat 739.760 kb on - strandat 739.827 kb on - strandat 739.875 kb on - strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.895 kb on + strandat 739.896 kb on - strandat 739.896 kb on - strandat 739.896 kb on - strandat 739.896 kb on - strandat 739.896 kb on - strandat 739.896 kb on - strandat 739.897 kb on + strandat 739.898 kb on - strandat 739.904 kb on + strandat 739.905 kb on - strandat 739.934 kb on + strandat 739.935 kb on - strandat 739.947 kb on + strandat 739.947 kb on + strandat 739.947 kb on + strandat 739.947 kb on + strandat 739.947 kb on + strandat 739.972 kb on + strandat 739.972 kb on + strandat 740.015 kb on + strandat 740.016 kb on - strandat 740.016 kb on - strandat 740.016 kb on - strandat 740.016 kb on - strandat 740.137 kb on + strand, within Sama_0592at 740.138 kb on - strand, within Sama_0592at 740.188 kb on + strand, within Sama_0592at 740.188 kb on + strand, within Sama_0592at 740.188 kb on + strand, within Sama_0592at 740.189 kb on - strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.195 kb on + strand, within Sama_0592at 740.196 kb on - strand, within Sama_0592at 740.196 kb on - strand, within Sama_0592at 740.235 kb on + strand, within Sama_0592at 740.235 kb on + strand, within Sama_0592at 740.236 kb on - strand, within Sama_0592at 740.334 kb on + strand, within Sama_0592at 740.356 kb on + strand, within Sama_0592at 740.398 kb on + strand, within Sama_0592at 740.398 kb on + strand, within Sama_0592at 740.398 kb on + strand, within Sama_0592at 740.398 kb on + strand, within Sama_0592

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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737,764 + Sama_0590 0.66 +0.6
737,764 + Sama_0590 0.66 -2.1
737,764 + Sama_0590 0.66 +0.4
737,765 - Sama_0590 0.66 -0.2
737,778 - Sama_0590 0.67 +0.3
737,872 + Sama_0590 0.71 -1.0
737,878 + Sama_0590 0.71 -0.2
737,878 + Sama_0590 0.71 -0.9
737,878 + Sama_0590 0.71 +0.1
737,879 - Sama_0590 0.71 -1.3
737,879 - Sama_0590 0.71 +2.4
737,879 - Sama_0590 0.71 -0.9
737,879 - Sama_0590 0.71 -0.5
737,879 - Sama_0590 0.71 -1.4
737,941 + Sama_0590 0.74 +0.2
737,942 - Sama_0590 0.74 -0.1
738,053 + Sama_0590 0.79 -0.3
738,053 + Sama_0590 0.79 -0.0
738,053 + Sama_0590 0.79 +1.6
738,054 - Sama_0590 0.79 +0.7
738,054 - Sama_0590 0.79 -1.3
738,066 + Sama_0590 0.80 -1.3
738,066 + Sama_0590 0.80 +0.9
738,067 - Sama_0590 0.80 +0.0
738,067 - Sama_0590 0.80 +0.4
738,106 + Sama_0590 0.81 -0.3
738,106 + Sama_0590 0.81 -0.2
738,106 + Sama_0590 0.81 -0.4
738,106 + Sama_0590 0.81 +0.1
738,107 - Sama_0590 0.81 +0.8
738,107 - Sama_0590 0.81 +0.2
738,107 - Sama_0590 0.81 -0.2
738,107 - Sama_0590 0.81 -0.3
738,107 - Sama_0590 0.81 +0.2
738,109 + Sama_0590 0.81 +0.2
738,109 + Sama_0590 0.81 +1.8
738,110 - Sama_0590 0.82 -1.0
738,110 - Sama_0590 0.82 -0.6
738,127 + Sama_0590 0.82 -0.4
738,127 + Sama_0590 0.82 +0.3
738,128 - Sama_0590 0.82 -0.2
738,128 - Sama_0590 0.82 -1.4
738,128 - Sama_0590 0.82 +1.4
738,128 - Sama_0590 0.82 -2.0
738,226 + Sama_0590 0.87 +0.1
738,226 + Sama_0590 0.87 -0.2
738,227 - Sama_0590 0.87 +0.4
738,245 + Sama_0590 0.88 +0.5
738,245 + Sama_0590 0.88 -0.1
738,246 - Sama_0590 0.88 +0.0
738,246 - Sama_0590 0.88 -0.5
738,246 - Sama_0590 0.88 +0.5
738,246 - Sama_0590 0.88 -1.3
738,247 + Sama_0590 0.88 -1.6
738,247 + Sama_0590 0.88 +1.0
738,247 + Sama_0590 0.88 +0.4
738,247 + Sama_0590 0.88 -0.9
738,247 + Sama_0590 0.88 -0.2
738,248 - Sama_0590 0.88 -1.6
738,248 - Sama_0590 0.88 -0.4
738,248 - Sama_0590 0.88 +0.9
738,248 - Sama_0590 0.88 +0.6
738,248 - Sama_0590 0.88 -0.6
738,248 - Sama_0590 0.88 -0.4
738,289 + Sama_0590 0.90 +0.7
738,289 + Sama_0590 0.90 +0.5
738,289 + Sama_0590 0.90 +0.4
738,290 - Sama_0590 0.90 -0.2
738,290 - Sama_0590 0.90 +0.5
738,290 - Sama_0590 0.90 +2.0
738,299 + +0.2
738,299 + +1.6
738,299 + +0.2
738,300 - -0.8
738,509 + -0.6
738,510 - -0.0
738,548 - -0.8
738,553 + -1.1
738,554 - -1.1
738,558 + -0.2
738,574 + +0.3
738,593 + +0.2
738,617 + -0.7
738,618 - +0.4
738,644 + -0.1
738,669 + +0.0
738,669 + -0.3
738,669 + -0.9
738,669 + +0.6
738,669 + +0.3
738,669 + +0.8
738,669 + -0.3
738,670 - +0.7
738,670 - -1.3
738,670 - -0.1
738,678 + +0.8
738,679 - -1.4
738,687 + +0.7
738,687 + +0.7
738,731 + +0.6
738,741 + -1.0
738,741 + +0.1
738,843 + Sama_0591 0.14 -0.4
738,843 + Sama_0591 0.14 -0.3
738,913 + Sama_0591 0.24 -2.6
738,913 + Sama_0591 0.24 -0.4
738,913 + Sama_0591 0.24 +0.3
738,913 + Sama_0591 0.24 +1.1
738,914 - Sama_0591 0.25 -2.1
738,914 - Sama_0591 0.25 +0.4
738,914 - Sama_0591 0.25 -0.0
738,957 - Sama_0591 0.31 -1.9
739,026 + Sama_0591 0.40 +0.5
739,033 + Sama_0591 0.41 -1.6
739,033 + Sama_0591 0.41 -1.3
739,034 - Sama_0591 0.42 -1.7
739,034 - Sama_0591 0.42 -1.0
739,034 - Sama_0591 0.42 -0.7
739,061 + Sama_0591 0.45 -0.5
739,061 + Sama_0591 0.45 +1.8
739,061 + Sama_0591 0.45 -0.9
739,062 - Sama_0591 0.46 -0.3
739,062 - Sama_0591 0.46 -1.1
739,062 - Sama_0591 0.46 -2.2
739,102 + Sama_0591 0.51 -0.9
739,102 + Sama_0591 0.51 -1.4
739,102 + Sama_0591 0.51 +0.8
739,102 + Sama_0591 0.51 -0.2
739,102 + Sama_0591 0.51 -1.4
739,102 + Sama_0591 0.51 -0.5
739,102 + Sama_0591 0.51 -0.4
739,102 + Sama_0591 0.51 -0.9
739,102 + Sama_0591 0.51 -1.0
739,102 + Sama_0591 0.51 -1.3
739,102 + Sama_0591 0.51 -0.9
739,102 + Sama_0591 0.51 -0.1
739,103 - Sama_0591 0.51 -0.2
739,103 - Sama_0591 0.51 -1.3
739,103 - Sama_0591 0.51 -0.4
739,103 - Sama_0591 0.51 -0.4
739,103 - Sama_0591 0.51 -2.0
739,103 - Sama_0591 0.51 -0.9
739,103 - Sama_0591 0.51 +0.1
739,103 - Sama_0591 0.51 -0.9
739,103 - Sama_0591 0.51 -0.4
739,103 - Sama_0591 0.51 -2.1
739,122 + Sama_0591 0.54 +0.5
739,123 - Sama_0591 0.54 +0.1
739,123 - Sama_0591 0.54 -2.4
739,123 - Sama_0591 0.54 +0.6
739,128 + Sama_0591 0.55 -0.2
739,129 - Sama_0591 0.55 +0.6
739,129 - Sama_0591 0.55 +0.4
739,129 - Sama_0591 0.55 -2.6
739,173 + Sama_0591 0.61 -0.5
739,198 + Sama_0591 0.65 -0.9
739,198 + Sama_0591 0.65 -0.0
739,199 - Sama_0591 0.65 +0.2
739,199 - Sama_0591 0.65 -0.5
739,206 + Sama_0591 0.66 +0.7
739,318 - Sama_0591 0.82 +0.7
739,329 + Sama_0591 0.84 +0.0
739,329 + Sama_0591 0.84 -0.5
739,329 + Sama_0591 0.84 -0.1
739,329 + Sama_0591 0.84 -1.0
739,330 - Sama_0591 0.84 -1.3
739,330 - Sama_0591 0.84 -0.9
739,330 - Sama_0591 0.84 -0.4
739,330 - Sama_0591 0.84 -1.3
739,330 - Sama_0591 0.84 +0.6
739,330 - Sama_0591 0.84 +0.7
739,351 - Sama_0591 0.87 +0.7
739,404 + +1.2
739,417 + -0.1
739,417 + -0.0
739,417 + -0.4
739,441 + -0.2
739,459 - +0.3
739,490 + -0.2
739,491 - -0.0
739,541 + -0.8
739,546 + -0.2
739,546 + -1.2
739,546 + +0.4
739,546 + -0.0
739,547 - -0.5
739,547 - -0.3
739,549 + +1.4
739,549 + -0.4
739,549 + +0.1
739,549 + -0.1
739,550 - +1.1
739,550 - -0.6
739,550 - -0.1
739,550 - -0.6
739,550 - -1.3
739,550 - -0.2
739,550 - +0.5
739,550 - +0.2
739,583 + +0.5
739,583 + +0.4
739,583 + +0.4
739,583 + -0.3
739,583 + -0.5
739,583 + -0.2
739,584 - -1.1
739,584 - +0.5
739,584 - +0.1
739,584 - -0.5
739,584 - -1.1
739,584 - -0.3
739,587 + -0.1
739,587 + +0.7
739,588 - +0.4
739,588 - -1.2
739,588 - +0.2
739,593 + -0.2
739,594 - -0.5
739,603 + -0.1
739,603 + -0.3
739,604 - +0.1
739,604 - -1.0
739,604 - +1.4
739,668 + -0.7
739,674 + +0.8
739,675 - +0.0
739,684 + -1.5
739,684 + -0.3
739,684 + -0.5
739,685 - -1.4
739,685 - -1.2
739,685 - -0.9
739,754 - -0.0
739,759 + -0.1
739,759 + +0.7
739,759 + -0.2
739,759 + +0.3
739,759 + -0.2
739,760 - -0.0
739,827 - +0.7
739,875 - +0.3
739,895 + -0.6
739,895 + +0.7
739,895 + -0.5
739,895 + +1.0
739,895 + +0.5
739,895 + +0.7
739,895 + +0.1
739,896 - -1.0
739,896 - +0.8
739,896 - +1.2
739,896 - -1.6
739,896 - -0.1
739,896 - -0.8
739,897 + -0.7
739,898 - +0.3
739,904 + -0.0
739,905 - -0.1
739,934 + +0.0
739,935 - -1.0
739,947 + -1.5
739,947 + +0.2
739,947 + -2.2
739,947 + -0.4
739,947 + +0.0
739,972 + +0.2
739,972 + -0.4
740,015 + -1.4
740,016 - +1.0
740,016 - +0.5
740,016 - +0.4
740,016 - -0.4
740,137 + Sama_0592 0.12 +0.7
740,138 - Sama_0592 0.12 -0.6
740,188 + Sama_0592 0.14 -0.7
740,188 + Sama_0592 0.14 -0.9
740,188 + Sama_0592 0.14 +0.4
740,189 - Sama_0592 0.14 -0.2
740,195 + Sama_0592 0.14 -0.3
740,195 + Sama_0592 0.14 +0.2
740,195 + Sama_0592 0.14 -1.0
740,195 + Sama_0592 0.14 +1.4
740,195 + Sama_0592 0.14 -0.0
740,195 + Sama_0592 0.14 +0.7
740,196 - Sama_0592 0.14 +0.4
740,196 - Sama_0592 0.14 +0.1
740,235 + Sama_0592 0.15 -1.0
740,235 + Sama_0592 0.15 -1.8
740,236 - Sama_0592 0.15 +0.0
740,334 + Sama_0592 0.18 +0.6
740,356 + Sama_0592 0.18 +0.4
740,398 + Sama_0592 0.20 +0.6
740,398 + Sama_0592 0.20 +0.3
740,398 + Sama_0592 0.20 +0.2
740,398 + Sama_0592 0.20 +0.9

Or see this region's nucleotide sequence