Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2883 and SO2884 are separated by 9 nucleotides SO2884 and fadR are separated by 346 nucleotides
SO2883: SO2883 - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 3,004,305 to 3,005,573
SO2883
SO2884: SO2884 - ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 3,005,583 to 3,007,109
SO2884
SO2885: fadR - fatty acid metabolism regulator protein (NCBI ptt file), at 3,007,456 to 3,008,178
fadR
Position (kb)
3005
3006
3007
3008 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3004.592 kb on - strand, within SO2883 at 3004.623 kb on - strand, within SO2883 at 3004.627 kb on - strand, within SO2883 at 3004.701 kb on - strand, within SO2883 at 3004.701 kb on - strand, within SO2883 at 3004.948 kb on + strand, within SO2883 at 3005.057 kb on - strand, within SO2883 at 3005.167 kb on - strand, within SO2883 at 3005.177 kb on - strand, within SO2883 at 3005.492 kb on + strand at 3005.492 kb on - strand at 3005.536 kb on - strand at 3005.568 kb on + strand at 3005.568 kb on + strand at 3005.568 kb on + strand at 3005.576 kb on - strand at 3005.576 kb on - strand at 3005.646 kb on - strand at 3005.731 kb on + strand at 3005.739 kb on - strand, within SO2884 at 3005.851 kb on - strand, within SO2884 at 3005.887 kb on - strand, within SO2884 at 3005.950 kb on - strand, within SO2884 at 3006.141 kb on - strand, within SO2884 at 3006.451 kb on - strand, within SO2884 at 3006.517 kb on + strand, within SO2884 at 3006.547 kb on - strand, within SO2884 at 3006.551 kb on - strand, within SO2884 at 3006.677 kb on - strand, within SO2884 at 3006.679 kb on + strand, within SO2884 at 3006.680 kb on + strand, within SO2884 at 3006.687 kb on + strand, within SO2884 at 3006.687 kb on + strand, within SO2884 at 3006.687 kb on + strand, within SO2884 at 3006.695 kb on - strand, within SO2884 at 3006.877 kb on - strand, within SO2884 at 3006.950 kb on - strand, within SO2884 at 3006.950 kb on - strand, within SO2884 at 3006.950 kb on - strand, within SO2884 at 3006.996 kb on - strand at 3007.005 kb on + strand at 3007.032 kb on - strand at 3007.036 kb on + strand at 3007.046 kb on + strand at 3007.092 kb on - strand at 3007.094 kb on + strand at 3007.094 kb on + strand at 3007.094 kb on + strand at 3007.094 kb on + strand at 3007.094 kb on + strand at 3007.094 kb on + strand at 3007.102 kb on - strand at 3007.102 kb on - strand at 3007.102 kb on - strand at 3007.357 kb on - strand at 3007.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 3,004,592 - SO2883 0.23 -3.6 3,004,623 - SO2883 0.25 -2.2 3,004,627 - SO2883 0.25 -4.7 3,004,701 - SO2883 0.31 -2.9 3,004,701 - SO2883 0.31 -1.0 3,004,948 + SO2883 0.51 -2.4 3,005,057 - SO2883 0.59 -4.5 3,005,167 - SO2883 0.68 -1.1 3,005,177 - SO2883 0.69 -1.9 3,005,492 + -2.9 3,005,492 - -3.0 3,005,536 - -4.4 3,005,568 + -2.3 3,005,568 + -0.8 3,005,568 + -2.3 3,005,576 - -3.5 3,005,576 - -5.1 3,005,646 - -4.2 3,005,731 + -4.4 3,005,739 - SO2884 0.10 -3.4 3,005,851 - SO2884 0.18 -1.9 3,005,887 - SO2884 0.20 -3.0 3,005,950 - SO2884 0.24 -2.3 3,006,141 - SO2884 0.37 -3.9 3,006,451 - SO2884 0.57 -3.9 3,006,517 + SO2884 0.61 -3.0 3,006,547 - SO2884 0.63 -2.9 3,006,551 - SO2884 0.63 -1.6 3,006,677 - SO2884 0.72 -5.4 3,006,679 + SO2884 0.72 -4.0 3,006,680 + SO2884 0.72 -3.1 3,006,687 + SO2884 0.72 -4.0 3,006,687 + SO2884 0.72 -3.6 3,006,687 + SO2884 0.72 -1.4 3,006,695 - SO2884 0.73 -2.2 3,006,877 - SO2884 0.85 -2.4 3,006,950 - SO2884 0.90 -3.6 3,006,950 - SO2884 0.90 -3.0 3,006,950 - SO2884 0.90 -5.4 3,006,996 - -4.9 3,007,005 + -2.9 3,007,032 - -4.4 3,007,036 + -2.7 3,007,046 + -4.6 3,007,092 - -2.4 3,007,094 + -2.1 3,007,094 + -1.7 3,007,094 + -2.4 3,007,094 + -1.8 3,007,094 + -2.0 3,007,094 + -1.1 3,007,102 - -3.0 3,007,102 - -3.7 3,007,102 - -4.3 3,007,357 - -0.4 3,007,455 + +1.0
Or see this region's nucleotide sequence