Strain Fitness in Shewanella oneidensis MR-1 around SO2884

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2883 and SO2884 are separated by 9 nucleotidesSO2884 and fadR are separated by 346 nucleotides SO2883: SO2883 - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 3,004,305 to 3,005,573 SO2883 SO2884: SO2884 - ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 3,005,583 to 3,007,109 SO2884 SO2885: fadR - fatty acid metabolism regulator protein (NCBI ptt file), at 3,007,456 to 3,008,178 fadR Position (kb) 3005 3006 3007 3008Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3004.592 kb on - strand, within SO2883at 3004.623 kb on - strand, within SO2883at 3004.627 kb on - strand, within SO2883at 3004.701 kb on - strand, within SO2883at 3004.701 kb on - strand, within SO2883at 3004.948 kb on + strand, within SO2883at 3005.057 kb on - strand, within SO2883at 3005.167 kb on - strand, within SO2883at 3005.177 kb on - strand, within SO2883at 3005.492 kb on + strandat 3005.492 kb on - strandat 3005.536 kb on - strandat 3005.568 kb on + strandat 3005.568 kb on + strandat 3005.568 kb on + strandat 3005.576 kb on - strandat 3005.576 kb on - strandat 3005.646 kb on - strandat 3005.731 kb on + strandat 3005.739 kb on - strand, within SO2884at 3005.851 kb on - strand, within SO2884at 3005.887 kb on - strand, within SO2884at 3005.950 kb on - strand, within SO2884at 3006.141 kb on - strand, within SO2884at 3006.451 kb on - strand, within SO2884at 3006.517 kb on + strand, within SO2884at 3006.547 kb on - strand, within SO2884at 3006.551 kb on - strand, within SO2884at 3006.677 kb on - strand, within SO2884at 3006.679 kb on + strand, within SO2884at 3006.680 kb on + strand, within SO2884at 3006.687 kb on + strand, within SO2884at 3006.687 kb on + strand, within SO2884at 3006.687 kb on + strand, within SO2884at 3006.695 kb on - strand, within SO2884at 3006.877 kb on - strand, within SO2884at 3006.950 kb on - strand, within SO2884at 3006.950 kb on - strand, within SO2884at 3006.950 kb on - strand, within SO2884at 3006.996 kb on - strandat 3007.005 kb on + strandat 3007.032 kb on - strandat 3007.036 kb on + strandat 3007.046 kb on + strandat 3007.092 kb on - strandat 3007.094 kb on + strandat 3007.094 kb on + strandat 3007.094 kb on + strandat 3007.094 kb on + strandat 3007.094 kb on + strandat 3007.094 kb on + strandat 3007.102 kb on - strandat 3007.102 kb on - strandat 3007.102 kb on - strandat 3007.357 kb on - strandat 3007.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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3,004,592 - SO2883 0.23 -3.6
3,004,623 - SO2883 0.25 -2.2
3,004,627 - SO2883 0.25 -4.7
3,004,701 - SO2883 0.31 -2.9
3,004,701 - SO2883 0.31 -1.0
3,004,948 + SO2883 0.51 -2.4
3,005,057 - SO2883 0.59 -4.5
3,005,167 - SO2883 0.68 -1.1
3,005,177 - SO2883 0.69 -1.9
3,005,492 + -2.9
3,005,492 - -3.0
3,005,536 - -4.4
3,005,568 + -2.3
3,005,568 + -0.8
3,005,568 + -2.3
3,005,576 - -3.5
3,005,576 - -5.1
3,005,646 - -4.2
3,005,731 + -4.4
3,005,739 - SO2884 0.10 -3.4
3,005,851 - SO2884 0.18 -1.9
3,005,887 - SO2884 0.20 -3.0
3,005,950 - SO2884 0.24 -2.3
3,006,141 - SO2884 0.37 -3.9
3,006,451 - SO2884 0.57 -3.9
3,006,517 + SO2884 0.61 -3.0
3,006,547 - SO2884 0.63 -2.9
3,006,551 - SO2884 0.63 -1.6
3,006,677 - SO2884 0.72 -5.4
3,006,679 + SO2884 0.72 -4.0
3,006,680 + SO2884 0.72 -3.1
3,006,687 + SO2884 0.72 -4.0
3,006,687 + SO2884 0.72 -3.6
3,006,687 + SO2884 0.72 -1.4
3,006,695 - SO2884 0.73 -2.2
3,006,877 - SO2884 0.85 -2.4
3,006,950 - SO2884 0.90 -3.6
3,006,950 - SO2884 0.90 -3.0
3,006,950 - SO2884 0.90 -5.4
3,006,996 - -4.9
3,007,005 + -2.9
3,007,032 - -4.4
3,007,036 + -2.7
3,007,046 + -4.6
3,007,092 - -2.4
3,007,094 + -2.1
3,007,094 + -1.7
3,007,094 + -2.4
3,007,094 + -1.8
3,007,094 + -2.0
3,007,094 + -1.1
3,007,102 - -3.0
3,007,102 - -3.7
3,007,102 - -4.3
3,007,357 - -0.4
3,007,455 + +1.0

Or see this region's nucleotide sequence