Strain Fitness in Shewanella oneidensis MR-1 around SO1444

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
1,506,546	-				+0.9
1,506,546	-				+0.9
1,506,560	+				-0.0
1,506,579	-				+0.7
1,506,579	-				-0.1
1,506,620	+				-0.0
1,506,625	-				-0.4
1,506,628	-				-0.7
1,506,628	-				+0.7
1,506,630	+				+0.1
1,506,630	+				-0.4
1,506,630	+				+0.7
1,506,630	+				+0.1
1,506,630	+				+0.5
1,506,630	+				+0.0
1,506,635	-				+0.3
1,506,638	-				+0.3
1,506,638	-				+0.4
1,506,638	-				-0.1
1,506,687	+				+0.5
1,506,705	+				+0.5
1,506,713	+				+0.9
1,506,713	-				+0.6
1,506,721	-				+0.0
1,506,721	-				+0.3
1,506,721	-				+0.7
1,506,721	-				-0.1
1,506,750	-				+0.1
1,506,760	-				+1.6
1,506,762	+				-0.7
1,506,762	-				+0.6
1,506,764	+				-0.3
1,506,764	+				+0.3
1,506,764	+				+0.3
1,506,764	+				-0.0
1,506,772	-				-0.5
1,506,776	+				+0.3
1,506,776	+				+0.1
1,506,777	-				-2.4
1,506,786	+				-2.3
1,506,786	+				-1.0
1,506,794	-				+0.9
1,506,794	-				-0.1
1,506,837	+		SO1443	0.13	-0.2
1,506,839	+		SO1443	0.13	+1.2
1,506,839	+		SO1443	0.13	+0.4
1,506,839	+		SO1443	0.13	+0.7
1,506,839	+		SO1443	0.13	+0.4
1,506,839	+		SO1443	0.13	-1.5
1,506,839	+		SO1443	0.13	+0.4
1,506,839	+		SO1443	0.13	-0.4
1,506,839	+		SO1443	0.13	-1.2
1,506,839	+		SO1443	0.13	+0.7
1,506,839	+		SO1443	0.13	-1.5
1,506,839	+		SO1443	0.13	+0.3
1,506,839	+		SO1443	0.13	-0.1
1,506,839	+		SO1443	0.13	-0.6
1,506,839	+		SO1443	0.13	-0.9
1,506,839	+		SO1443	0.13	+0.0
1,506,839	+		SO1443	0.13	-0.9
1,506,839	+		SO1443	0.13	-0.4
1,506,839	+		SO1443	0.13	-0.9
1,506,839	+		SO1443	0.13	-0.2
1,506,839	+		SO1443	0.13	+0.1
1,506,844	+		SO1443	0.14	+0.8
1,506,844	+		SO1443	0.14	+0.2
1,506,845	-		SO1443	0.14	+0.0
1,506,847	-		SO1443	0.15	+0.8
1,506,847	-		SO1443	0.15	+0.5
1,506,847	-		SO1443	0.15	+0.6
1,506,847	-		SO1443	0.15	+0.2
1,506,847	-		SO1443	0.15	+0.5
1,506,847	-		SO1443	0.15	-0.1
1,506,847	-		SO1443	0.15	+0.0
1,506,847	-		SO1443	0.15	+0.7
1,506,847	-		SO1443	0.15	+0.6
1,506,847	-		SO1443	0.15	+1.3
1,506,847	-		SO1443	0.15	+0.7
1,506,847	-		SO1443	0.15	+0.3
1,506,847	-		SO1443	0.15	+0.9
1,506,852	-		SO1443	0.15	-0.3
1,506,854	+		SO1443	0.16	+1.1
1,506,854	+		SO1443	0.16	+0.4
1,506,854	+		SO1443	0.16	+0.2
1,506,862	-		SO1443	0.17	-0.1
1,506,862	-		SO1443	0.17	-0.1
1,506,862	-		SO1443	0.17	+0.2
1,506,862	-		SO1443	0.17	+0.9
1,506,864	+		SO1443	0.17	-0.0
1,506,864	+		SO1443	0.17	+0.7
1,506,872	-		SO1443	0.19	-0.4
1,506,885	+		SO1443	0.21	+0.7
1,506,893	-		SO1443	0.22	+0.2
1,506,893	-		SO1443	0.22	+1.2
1,506,910	+		SO1443	0.24	+1.1
1,506,918	-		SO1443	0.26	+0.6
1,506,918	-		SO1443	0.26	+0.1
1,506,918	-		SO1443	0.26	+0.4
1,506,919	+		SO1443	0.26	+0.7
1,506,924	+		SO1443	0.27	+0.4
1,506,927	-		SO1443	0.27	+1.0
1,506,928	-		SO1443	0.27	+0.6
1,506,929	+		SO1443	0.27	-0.1
1,506,932	+		SO1443	0.28	+0.0
1,506,932	+		SO1443	0.28	+0.8
1,506,932	+		SO1443	0.28	+1.6
1,506,932	+		SO1443	0.28	-1.9
1,506,932	+		SO1443	0.28	+0.6
1,506,932	-		SO1443	0.28	+0.8
1,506,932	-		SO1443	0.28	-0.5
1,506,932	-		SO1443	0.28	+0.3
1,506,932	-		SO1443	0.28	-0.2
1,506,934	+		SO1443	0.28	-0.3
1,506,940	-		SO1443	0.29	+0.6
1,506,940	-		SO1443	0.29	+0.4
1,506,940	-		SO1443	0.29	-0.3
1,506,940	-		SO1443	0.29	+0.6
1,506,940	-		SO1443	0.29	-0.8
1,506,940	-		SO1443	0.29	-0.5
1,506,940	-		SO1443	0.29	-3.1
1,506,940	-		SO1443	0.29	+0.6
1,506,955	+		SO1443	0.31	+0.1
1,506,955	+		SO1443	0.31	+0.4
1,506,967	+		SO1443	0.33	+0.0
1,506,975	-		SO1443	0.34	-0.0
1,506,994	+		SO1443	0.37	+0.1
1,507,000	+		SO1443	0.38	-0.9
1,507,002	+		SO1443	0.39	+0.1
1,507,005	-		SO1443	0.39	-0.4
1,507,010	-		SO1443	0.40	+0.8
1,507,010	-		SO1443	0.40	+0.3
1,507,010	-		SO1443	0.40	+0.3
1,507,011	+		SO1443	0.40	-0.4
1,507,011	+		SO1443	0.40	-0.4
1,507,015	+		SO1443	0.41	-0.4
1,507,015	+		SO1443	0.41	+0.1
1,507,016	+		SO1443	0.41	+0.4
1,507,016	+		SO1443	0.41	-0.4
1,507,018	-		SO1443	0.41	-0.5
1,507,023	-		SO1443	0.42	-0.8
1,507,023	-		SO1443	0.42	-0.3
1,507,044	+		SO1443	0.45	+0.3
1,507,044	+		SO1443	0.45	-0.4
1,507,044	+		SO1443	0.45	+0.5
1,507,044	+		SO1443	0.45	+0.1
1,507,044	+		SO1443	0.45	-0.1
1,507,052	-		SO1443	0.46	+0.2
1,507,052	-		SO1443	0.46	+0.3
1,507,052	-		SO1443	0.46	+0.6
1,507,052	-		SO1443	0.46	+0.2
1,507,052	-		SO1443	0.46	+0.7
1,507,057	-		SO1443	0.47	+2.1
1,507,064	+		SO1443	0.48	-0.2
1,507,066	+		SO1443	0.48	+0.0
1,507,066	+		SO1443	0.48	+0.8
1,507,066	+		SO1443	0.48	-0.4
1,507,066	+		SO1443	0.48	-1.1
1,507,066	+		SO1443	0.48	+0.4
1,507,066	+		SO1443	0.48	-0.1
1,507,066	+		SO1443	0.48	+0.2
1,507,066	+		SO1443	0.48	+0.5
1,507,066	+		SO1443	0.48	-0.4
1,507,066	+		SO1443	0.48	-0.0
1,507,066	+		SO1443	0.48	+0.1
1,507,067	+		SO1443	0.49	+0.7
1,507,072	+		SO1443	0.49	+0.2
1,507,074	-		SO1443	0.50	-0.9
1,507,074	-		SO1443	0.50	+0.1
1,507,074	-		SO1443	0.50	-0.6
1,507,074	-		SO1443	0.50	-0.3
1,507,074	-		SO1443	0.50	-0.0
1,507,074	-		SO1443	0.50	-0.9
1,507,074	-		SO1443	0.50	+0.7
1,507,074	-		SO1443	0.50	+0.2
1,507,074	-		SO1443	0.50	+0.1
1,507,074	-		SO1443	0.50	-0.8
1,507,081	-		SO1443	0.51	-0.2
1,507,086	-		SO1443	0.52	+0.7
1,507,093	+		SO1443	0.53	-1.3
1,507,101	-		SO1443	0.54	-0.3
1,507,129	+		SO1443	0.58	-1.2
1,507,143	+		SO1443	0.60	+0.1
1,507,143	+		SO1443	0.60	-0.2
1,507,144	+		SO1443	0.60	-0.1
1,507,151	+		SO1443	0.62	+0.0
1,507,151	+		SO1443	0.62	-0.3
1,507,151	+		SO1443	0.62	-0.1
1,507,153	+		SO1443	0.62	+0.1
1,507,153	+		SO1443	0.62	+0.4
1,507,153	+		SO1443	0.62	-0.2
1,507,159	-		SO1443	0.63	+0.9
1,507,170	+		SO1443	0.65	-0.5
1,507,172	+		SO1443	0.65	-0.2
1,507,172	+		SO1443	0.65	+0.1
1,507,172	+		SO1443	0.65	+0.5
1,507,172	+		SO1443	0.65	+0.5
1,507,172	+		SO1443	0.65	-0.3
1,507,172	+		SO1443	0.65	-0.4
1,507,172	+		SO1443	0.65	+0.2
1,507,172	+		SO1443	0.65	+0.0
1,507,172	+		SO1443	0.65	-0.9
1,507,172	+		SO1443	0.65	-1.2
1,507,172	+		SO1443	0.65	+0.2
1,507,172	+		SO1443	0.65	+0.6
1,507,172	+		SO1443	0.65	+0.1
1,507,172	+		SO1443	0.65	+0.2
1,507,172	+		SO1443	0.65	-0.1
1,507,172	+		SO1443	0.65	-1.2
1,507,172	+		SO1443	0.65	+1.0
1,507,172	+		SO1443	0.65	-0.1
1,507,180	-		SO1443	0.66	+1.2
1,507,180	-		SO1443	0.66	-0.6
1,507,180	-		SO1443	0.66	+0.7
1,507,180	-		SO1443	0.66	+0.8
1,507,180	-		SO1443	0.66	+0.4
1,507,180	-		SO1443	0.66	+0.1
1,507,180	-		SO1443	0.66	+0.0
1,507,180	-		SO1443	0.66	+1.0
1,507,180	-		SO1443	0.66	+0.2
1,507,180	-		SO1443	0.66	+0.5
1,507,180	-		SO1443	0.66	-0.0
1,507,180	-		SO1443	0.66	+0.4
1,507,180	-		SO1443	0.66	+0.2
1,507,180	-		SO1443	0.66	+0.2
1,507,180	-		SO1443	0.66	-0.3
1,507,180	-		SO1443	0.66	-0.1
1,507,180	-		SO1443	0.66	-0.5
1,507,180	-		SO1443	0.66	-0.0
1,507,180	-		SO1443	0.66	-0.3
1,507,180	-		SO1443	0.66	-0.3
1,507,180	-		SO1443	0.66	+0.8
1,507,180	-		SO1443	0.66	+0.7
1,507,184	+		SO1443	0.67	-1.0
1,507,184	+		SO1443	0.67	-0.7
1,507,191	+		SO1443	0.68	-0.3
1,507,191	+		SO1443	0.68	-0.3
1,507,191	+		SO1443	0.68	+0.1
1,507,191	+		SO1443	0.68	-0.4
1,507,191	+		SO1443	0.68	+0.2
1,507,191	+		SO1443	0.68	+0.6
1,507,191	+		SO1443	0.68	-0.1
1,507,192	-		SO1443	0.68	+0.4
1,507,199	-		SO1443	0.69	+0.6
1,507,199	-		SO1443	0.69	-0.2
1,507,199	-		SO1443	0.69	+0.7
1,507,199	-		SO1443	0.69	+0.0
1,507,199	-		SO1443	0.69	-0.7
1,507,199	-		SO1443	0.69	+0.4
1,507,199	-		SO1443	0.69	-0.1
1,507,204	-		SO1443	0.70	-0.1
1,507,208	+		SO1443	0.70	+0.3
1,507,208	+		SO1443	0.70	+0.0
1,507,208	+		SO1443	0.70	-0.2
1,507,208	+		SO1443	0.70	+0.0
1,507,208	+		SO1443	0.70	-1.0
1,507,208	+		SO1443	0.70	+0.3
1,507,208	+		SO1443	0.70	-0.7
1,507,208	+		SO1443	0.70	+0.2
1,507,208	+		SO1443	0.70	-0.5
1,507,208	+		SO1443	0.70	+0.0
1,507,208	+		SO1443	0.70	+0.2
1,507,208	+		SO1443	0.70	+0.6
1,507,208	+		SO1443	0.70	+0.0
1,507,208	+		SO1443	0.70	+0.4
1,507,208	+		SO1443	0.70	+0.8
1,507,208	+		SO1443	0.70	+0.2
1,507,208	+		SO1443	0.70	-0.2
1,507,208	+		SO1443	0.70	+0.2
1,507,208	+		SO1443	0.70	-1.8
1,507,208	+		SO1443	0.70	+0.3
1,507,208	+		SO1443	0.70	+0.3
1,507,208	+		SO1443	0.70	-2.0
1,507,208	+		SO1443	0.70	-0.3
1,507,208	+		SO1443	0.70	-0.3
1,507,208	+		SO1443	0.70	-0.4
1,507,208	+		SO1443	0.70	-0.0
1,507,208	+		SO1443	0.70	+1.1
1,507,208	+		SO1443	0.70	+0.2
1,507,216	-		SO1443	0.72	+1.2
1,507,216	-		SO1443	0.72	+0.0
1,507,216	-		SO1443	0.72	+0.8
1,507,216	-		SO1443	0.72	-0.0
1,507,216	-		SO1443	0.72	-0.5
1,507,216	-		SO1443	0.72	+0.1
1,507,216	-		SO1443	0.72	+0.4
1,507,216	-		SO1443	0.72	+0.4
1,507,216	-		SO1443	0.72	+0.3
1,507,216	-		SO1443	0.72	+1.5
1,507,216	-		SO1443	0.72	-1.1
1,507,216	-		SO1443	0.72	+0.0
1,507,216	-		SO1443	0.72	-0.3
1,507,216	-		SO1443	0.72	+1.0
1,507,216	-		SO1443	0.72	+0.2
1,507,216	-		SO1443	0.72	+0.7
1,507,216	-		SO1443	0.72	+0.3
1,507,216	-		SO1443	0.72	+0.3
1,507,216	-		SO1443	0.72	+0.3
1,507,216	-		SO1443	0.72	+0.8
1,507,216	-		SO1443	0.72	-0.0
1,507,238	+		SO1443	0.75	-0.1
1,507,254	+		SO1443	0.77	+0.1
1,507,254	+		SO1443	0.77	+0.6
1,507,254	+		SO1443	0.77	-0.1
1,507,254	+		SO1443	0.77	-0.0
1,507,260	+		SO1443	0.78	-0.0
1,507,262	-		SO1443	0.79	-2.3
1,507,262	-		SO1443	0.79	+0.2
1,507,354	+				+0.7
1,507,368	+				+1.4
1,507,372	+				-0.9
1,507,373	-				+0.1
1,507,392	+				-0.6
1,507,392	-				+1.2
1,507,404	-				-0.4
1,507,436	+				+0.3
1,507,446	+				-0.5
1,507,453	+				+0.0
1,507,454	-				+0.2
1,507,455	+				-1.7
1,507,463	-				+0.5
1,507,480	+				-0.1
1,507,542	-				+0.3
1,507,584	+		SO1444	0.13	+0.6
1,507,607	+		SO1444	0.21	+1.3
1,507,615	-		SO1444	0.23	-0.3
1,507,671	-		SO1444	0.43	+0.1
1,507,758	-		SO1444	0.72	-0.1
1,507,794	+		SO1444	0.84	+0.2
1,508,098	+				-1.4
1,508,152	-				-3.7
1,508,220	+				+0.7
1,508,220	+				-0.0
1,508,228	-				+0.5
1,508,260	+				+1.1
1,508,268	-				+0.3
1,508,373	+				+0.1
1,508,376	-				+0.1
1,508,384	-				+0.9
1,508,410	-				+0.4
1,508,432	+				+0.4
1,508,468	-				+0.1
1,508,473	+		SO1447	0.11	-1.3
1,508,495	-		SO1447	0.14	-0.1
1,508,495	-		SO1447	0.14	-0.2
1,508,643	-		SO1447	0.34	-2.0
1,508,647	+		SO1447	0.35	-0.2
1,508,647	+		SO1447	0.35	-0.5
1,508,647	+		SO1447	0.35	+0.2
1,508,655	-		SO1447	0.36	-1.0
1,508,661	+		SO1447	0.37	+1.2
1,508,696	+		SO1447	0.41	-0.6
1,508,696	+		SO1447	0.41	+0.3
1,508,757	+		SO1447	0.50	-1.0
1,508,759	-		SO1447	0.50	-0.8
1,508,821	-		SO1447	0.59	-0.6
1,508,826	+		SO1447	0.59	+0.3
1,508,839	-		SO1447	0.61	-0.7