Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0912 and fic are separated by 697 nucleotides fic and SO0914 are separated by 56 nucleotides
SO0912: SO0912 - hypothetical protein (NCBI ptt file), at 938,664 to 939,059
SO0912
SO0913: fic - cell filamentation protein Fic (NCBI ptt file), at 939,757 to 940,350
fic
SO0914: SO0914 - conserved hypothetical protein (NCBI ptt file), at 940,407 to 941,603
SO0914
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.810 kb on - strand, within SO0912 at 938.812 kb on + strand, within SO0912 at 938.812 kb on + strand, within SO0912 at 938.812 kb on + strand, within SO0912 at 938.812 kb on + strand, within SO0912 at 938.815 kb on - strand, within SO0912 at 938.820 kb on - strand, within SO0912 at 938.820 kb on - strand, within SO0912 at 938.834 kb on + strand, within SO0912 at 938.844 kb on + strand, within SO0912 at 938.853 kb on + strand, within SO0912 at 938.854 kb on + strand, within SO0912 at 938.854 kb on + strand, within SO0912 at 938.854 kb on + strand, within SO0912 at 938.862 kb on - strand, within SO0912 at 938.872 kb on + strand, within SO0912 at 938.876 kb on + strand, within SO0912 at 938.876 kb on + strand, within SO0912 at 938.883 kb on + strand, within SO0912 at 938.885 kb on - strand, within SO0912 at 938.892 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.969 kb on + strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.977 kb on - strand, within SO0912 at 938.998 kb on + strand, within SO0912 at 939.007 kb on + strand, within SO0912 at 939.007 kb on + strand, within SO0912 at 939.007 kb on + strand, within SO0912 at 939.008 kb on + strand, within SO0912 at 939.010 kb on + strand, within SO0912 at 939.010 kb on + strand, within SO0912 at 939.018 kb on - strand, within SO0912 at 939.018 kb on - strand, within SO0912 at 939.021 kb on + strand at 939.021 kb on + strand at 939.021 kb on + strand at 939.024 kb on + strand at 939.034 kb on + strand at 939.039 kb on + strand at 939.080 kb on + strand at 939.080 kb on + strand at 939.081 kb on + strand at 939.086 kb on - strand at 939.093 kb on - strand at 939.101 kb on + strand at 939.112 kb on + strand at 939.120 kb on - strand at 939.120 kb on - strand at 939.184 kb on + strand at 939.184 kb on + strand at 939.184 kb on + strand at 939.219 kb on + strand at 939.219 kb on + strand at 939.219 kb on + strand at 939.220 kb on + strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.227 kb on - strand at 939.243 kb on + strand at 939.258 kb on + strand at 939.285 kb on - strand at 939.286 kb on + strand at 939.300 kb on + strand at 939.319 kb on + strand at 939.327 kb on + strand at 939.337 kb on + strand at 939.346 kb on - strand at 939.443 kb on - strand at 939.549 kb on + strand at 939.650 kb on - strand at 939.681 kb on - strand at 939.740 kb on - strand at 939.740 kb on - strand at 939.741 kb on - strand at 939.848 kb on + strand, within fic at 939.848 kb on + strand, within fic at 939.848 kb on + strand, within fic at 939.860 kb on - strand, within fic at 939.887 kb on + strand, within fic at 939.887 kb on + strand, within fic at 939.887 kb on + strand, within fic at 939.913 kb on - strand, within fic at 939.914 kb on + strand, within fic at 939.922 kb on - strand, within fic at 939.930 kb on - strand, within fic at 939.946 kb on + strand, within fic at 939.954 kb on - strand, within fic at 939.956 kb on + strand, within fic at 939.964 kb on - strand, within fic at 940.002 kb on + strand, within fic at 940.003 kb on + strand, within fic at 940.017 kb on + strand, within fic at 940.019 kb on - strand, within fic at 940.020 kb on - strand, within fic at 940.023 kb on + strand, within fic at 940.037 kb on - strand, within fic at 940.046 kb on + strand, within fic at 940.046 kb on + strand, within fic at 940.046 kb on + strand, within fic at 940.054 kb on - strand, within fic at 940.055 kb on - strand, within fic at 940.057 kb on + strand, within fic at 940.062 kb on + strand, within fic at 940.070 kb on + strand, within fic at 940.125 kb on - strand, within fic at 940.149 kb on + strand, within fic at 940.149 kb on + strand, within fic at 940.157 kb on - strand, within fic at 940.157 kb on - strand, within fic at 940.157 kb on - strand, within fic at 940.177 kb on + strand, within fic at 940.185 kb on - strand, within fic at 940.215 kb on + strand, within fic at 940.215 kb on + strand, within fic at 940.215 kb on + strand, within fic at 940.223 kb on - strand, within fic at 940.281 kb on + strand, within fic at 940.303 kb on + strand at 940.303 kb on + strand at 940.318 kb on - strand at 940.424 kb on - strand at 940.466 kb on - strand at 940.489 kb on - strand at 940.551 kb on - strand, within SO0914 at 940.577 kb on + strand, within SO0914 at 940.585 kb on - strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.642 kb on + strand, within SO0914 at 940.652 kb on + strand, within SO0914 at 940.652 kb on + strand at 940.652 kb on + strand, within SO0914 at 940.660 kb on - strand, within SO0914 at 940.660 kb on - strand, within SO0914 at 940.906 kb on + strand, within SO0914 at 940.907 kb on + strand, within SO0914 at 940.930 kb on + strand, within SO0914 at 940.963 kb on - strand, within SO0914 at 940.977 kb on - strand, within SO0914 at 941.054 kb on - strand, within SO0914 at 941.107 kb on + strand, within SO0914 at 941.108 kb on - strand, within SO0914 at 941.148 kb on - strand, within SO0914
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 938,810 - SO0912 0.37 +0.1 938,812 + SO0912 0.37 -0.2 938,812 + SO0912 0.37 -0.4 938,812 + SO0912 0.37 +0.3 938,812 + SO0912 0.37 +0.0 938,815 - SO0912 0.38 +0.5 938,820 - SO0912 0.39 -0.7 938,820 - SO0912 0.39 +0.2 938,834 + SO0912 0.43 -0.2 938,844 + SO0912 0.45 +0.5 938,853 + SO0912 0.48 -0.2 938,854 + SO0912 0.48 +0.0 938,854 + SO0912 0.48 -0.3 938,854 + SO0912 0.48 +0.3 938,862 - SO0912 0.50 +0.1 938,872 + SO0912 0.53 +0.3 938,876 + SO0912 0.54 -1.4 938,876 + SO0912 0.54 -0.4 938,883 + SO0912 0.55 +1.0 938,885 - SO0912 0.56 +1.2 938,892 + SO0912 0.58 +0.7 938,969 + SO0912 0.77 +0.4 938,969 + SO0912 0.77 -0.0 938,969 + SO0912 0.77 +0.0 938,969 + SO0912 0.77 -0.8 938,969 + SO0912 0.77 +1.4 938,969 + SO0912 0.77 +0.3 938,969 + SO0912 0.77 -0.7 938,969 + SO0912 0.77 +0.3 938,969 + SO0912 0.77 +0.1 938,969 + SO0912 0.77 +1.5 938,969 + SO0912 0.77 +0.2 938,969 + SO0912 0.77 -0.0 938,969 + SO0912 0.77 +0.3 938,969 + SO0912 0.77 -0.1 938,969 + SO0912 0.77 +0.6 938,969 + SO0912 0.77 +0.5 938,969 + SO0912 0.77 +0.5 938,969 + SO0912 0.77 +0.2 938,969 + SO0912 0.77 -0.2 938,969 + SO0912 0.77 +0.0 938,969 + SO0912 0.77 -0.6 938,969 + SO0912 0.77 -0.1 938,969 + SO0912 0.77 -0.6 938,969 + SO0912 0.77 -0.4 938,969 + SO0912 0.77 -0.0 938,969 + SO0912 0.77 +0.4 938,969 + SO0912 0.77 -0.2 938,969 + SO0912 0.77 +1.6 938,969 + SO0912 0.77 +0.5 938,969 + SO0912 0.77 +0.4 938,969 + SO0912 0.77 +0.4 938,969 + SO0912 0.77 +0.7 938,969 + SO0912 0.77 -0.6 938,969 + SO0912 0.77 +0.6 938,969 + SO0912 0.77 +0.3 938,969 + SO0912 0.77 -0.1 938,969 + SO0912 0.77 +0.5 938,969 + SO0912 0.77 -0.0 938,969 + SO0912 0.77 -3.1 938,969 + SO0912 0.77 -0.2 938,969 + SO0912 0.77 +0.5 938,969 + SO0912 0.77 -0.5 938,977 - SO0912 0.79 +0.1 938,977 - SO0912 0.79 -0.2 938,977 - SO0912 0.79 +0.9 938,977 - SO0912 0.79 +0.8 938,977 - SO0912 0.79 +0.5 938,977 - SO0912 0.79 +0.4 938,977 - SO0912 0.79 -0.5 938,977 - SO0912 0.79 +0.2 938,977 - SO0912 0.79 +0.5 938,977 - SO0912 0.79 +0.3 938,977 - SO0912 0.79 +0.9 938,977 - SO0912 0.79 +0.2 938,977 - SO0912 0.79 +1.8 938,977 - SO0912 0.79 +0.6 938,977 - SO0912 0.79 +0.4 938,977 - SO0912 0.79 +0.2 938,977 - SO0912 0.79 +0.4 938,977 - SO0912 0.79 -0.5 938,977 - SO0912 0.79 +0.6 938,977 - SO0912 0.79 +0.8 938,977 - SO0912 0.79 +0.4 938,977 - SO0912 0.79 -0.9 938,977 - SO0912 0.79 +0.0 938,977 - SO0912 0.79 +0.8 938,977 - SO0912 0.79 +0.5 938,977 - SO0912 0.79 +1.1 938,977 - SO0912 0.79 -0.7 938,998 + SO0912 0.84 -0.5 939,007 + SO0912 0.87 +0.8 939,007 + SO0912 0.87 -0.1 939,007 + SO0912 0.87 +0.5 939,008 + SO0912 0.87 -0.4 939,010 + SO0912 0.87 +0.2 939,010 + SO0912 0.87 -0.2 939,018 - SO0912 0.89 +1.2 939,018 - SO0912 0.89 +0.9 939,021 + +0.3 939,021 + +1.1 939,021 + -0.4 939,024 + -1.9 939,034 + +0.1 939,039 + -0.9 939,080 + -0.3 939,080 + +0.2 939,081 + +0.8 939,086 - -0.3 939,093 - +0.5 939,101 + +1.2 939,112 + +0.6 939,120 - +0.4 939,120 - +1.3 939,184 + +0.6 939,184 + -0.3 939,184 + -0.0 939,219 + -0.1 939,219 + -0.1 939,219 + +1.3 939,220 + -1.8 939,227 - -0.5 939,227 - -0.7 939,227 - -0.0 939,227 - +0.2 939,227 - +0.2 939,227 - -0.1 939,227 - +1.3 939,243 + +0.4 939,258 + +0.1 939,285 - -0.4 939,286 + -0.1 939,300 + +0.3 939,319 + +0.2 939,327 + +0.1 939,337 + -1.4 939,346 - +0.9 939,443 - -0.3 939,549 + +0.2 939,650 - -0.1 939,681 - +0.6 939,740 - -1.0 939,740 - -0.3 939,741 - +1.1 939,848 + fic SO0913 0.15 +0.8 939,848 + fic SO0913 0.15 +0.2 939,848 + fic SO0913 0.15 +2.0 939,860 - fic SO0913 0.17 +0.6 939,887 + fic SO0913 0.22 +0.5 939,887 + fic SO0913 0.22 -0.2 939,887 + fic SO0913 0.22 +0.4 939,913 - fic SO0913 0.26 -0.2 939,914 + fic SO0913 0.26 +0.3 939,922 - fic SO0913 0.28 +0.2 939,930 - fic SO0913 0.29 +0.3 939,946 + fic SO0913 0.32 +0.5 939,954 - fic SO0913 0.33 -0.1 939,956 + fic SO0913 0.34 -0.0 939,964 - fic SO0913 0.35 +0.3 940,002 + fic SO0913 0.41 +0.2 940,003 + fic SO0913 0.41 +0.4 940,017 + fic SO0913 0.44 -0.0 940,019 - fic SO0913 0.44 +1.7 940,020 - fic SO0913 0.44 +0.2 940,023 + fic SO0913 0.45 +2.0 940,037 - fic SO0913 0.47 +0.9 940,046 + fic SO0913 0.49 +0.3 940,046 + fic SO0913 0.49 -0.6 940,046 + fic SO0913 0.49 +0.3 940,054 - fic SO0913 0.50 +0.2 940,055 - fic SO0913 0.50 -0.3 940,057 + fic SO0913 0.51 +0.4 940,062 + fic SO0913 0.51 +0.4 940,070 + fic SO0913 0.53 +0.0 940,125 - fic SO0913 0.62 -0.1 940,149 + fic SO0913 0.66 +0.5 940,149 + fic SO0913 0.66 +0.3 940,157 - fic SO0913 0.67 +1.0 940,157 - fic SO0913 0.67 +0.5 940,157 - fic SO0913 0.67 +0.2 940,177 + fic SO0913 0.71 +1.1 940,185 - fic SO0913 0.72 +0.5 940,215 + fic SO0913 0.77 -0.4 940,215 + fic SO0913 0.77 -0.3 940,215 + fic SO0913 0.77 +0.1 940,223 - fic SO0913 0.78 +0.3 940,281 + fic SO0913 0.88 +2.8 940,303 + +0.5 940,303 + -0.6 940,318 - +0.2 940,424 - +1.5 940,466 - +0.5 940,489 - +1.1 940,551 - SO0914 0.12 +2.0 940,577 + SO0914 0.14 -0.3 940,585 - SO0914 0.15 -0.7 940,633 + SO0914 0.19 +1.4 940,633 + SO0914 0.19 -0.0 940,633 + SO0914 0.19 -0.1 940,633 + SO0914 0.19 +1.0 940,633 + SO0914 0.19 +0.7 940,633 + SO0914 0.19 -1.3 940,641 - SO0914 0.20 +0.5 940,641 - SO0914 0.20 -0.9 940,641 - SO0914 0.20 +0.2 940,642 + SO0914 0.20 +0.8 940,652 + SO0914 0.20 -0.5 940,652 + +0.7 940,652 + SO0914 0.20 -0.5 940,660 - SO0914 0.21 +0.3 940,660 - SO0914 0.21 +0.7 940,906 + SO0914 0.42 -0.3 940,907 + SO0914 0.42 +0.2 940,930 + SO0914 0.44 -0.1 940,963 - SO0914 0.46 +0.8 940,977 - SO0914 0.48 +0.7 941,054 - SO0914 0.54 -0.3 941,107 + SO0914 0.58 -0.4 941,108 - SO0914 0.59 -0.0 941,148 - SO0914 0.62 -0.2
Or see this region's nucleotide sequence